| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is yvdK [H]
Identifier: 116492730
GI number: 116492730
Start: 970921
End: 973173
Strand: Reverse
Name: yvdK [H]
Synonym: PEPE_0967
Alternate gene names: 116492730
Gene position: 973173-970921 (Counterclockwise)
Preceding gene: 116492731
Following gene: 116492729
Centisome position: 53.11
GC content: 38.57
Gene sequence:
>2253_bases ATGATTCGAACATTTAATATAGCACCTTGGCACATTGAAACTAATCAATGGGATCCCGAAAATAAAAGAATTCAAGAATC AATCACCAGCCTAGGCAATGAAAATCTGGGTATGCGAGGATTTTATGAAGAGGGTTACTCCGGAGACACTTTAGAAGGAA TTTATCTCGGAGGAGTTTGGTATCCAGATAAAACTCGTGTTGGTTGGTGGAAAAATGGTTATCCGAAGTATTTTGGTAAG GTAATCAACTCGGTCAATTTTATGAAACTTTTAATCACGGTAAACGGTGAACAATTAGATTTGAACCATCAAGTACCGCA AGACTTTAGCCTAGACTTAGATATGCAAAAAGCTATTTTAACTCGGAGTTTTAAGGTTGAAATTGGTGGCGTAAAACTGA AATTTATTTTTGAACGTTTCGTGAGTGCCGCACTTAAAGAATTAGTTGGACAACGTCTGACGATTAAAAATTTATCTGAT AGCAAAGCTGATATTGAAGTTATTAGTGCTATTGATGCTGATGTTTACAACGAAGATTCAAATTACGGTGAACAATTTTG GGACGTACTTGCTAAAAGTAATCAGCAAAACGAAGTGAAAATGCTTGCCAAAACCAAGGAAAATGATTTTGGCACTGAAC GTTTTACGGTAGGTTTTGATACGACCATCAAGACGGATATGGACTATGTCGGTGATGTAGAAAACGATCAATCGATCGGT CAAAAGTATCACATAGCTTTACAACCTGCTACAACTAGCATAATGGAGAAAAGAACCATTTTTGTCTCATCTAGAGATTT TGGTACAGTCGATGAAATAAACGAACGGATGCAGGAATTAACGCATACGATTAAGACGCAAAGTTTCGAGCAACTGTTAG AACAGCATGTTCAAGAATGGGAACAAAGATGGCAAAAATCAGACATTGAAATCAATGGTGATGCAGAAGCCCAACAAGGA ATTCGGTTTAATTTATTCCAGCTCTTTTCTACCTATTATGGTAACGATGCGCGCTTAAATATTGGTCCTAAAGGTTTTAC TGGTGAAAAATACGGTGGTGCAACCTACTGGGATACTGAAGCATTTGCCGTACCGGTATACCTAGGTGTATCGGAGTCTA AGGTCGTTCGTAACTTGTTAAAGTACCGTTACAATCAGCTGGATGGCGCCTTTGTAAATGCTAGGGAACAGGGGCTTAAA GGAGCTTTATATCCCATGGTGACTTTTAACGGGATAGAATGCCATAACGAATGGGAAATCACTTTCGAAGAAATTCATCG TAATGGTGATATTGCGTTTGCTATCTACAATTACACCCGTTATACAGGTGATCAATCCTACGTCCTTAACGAAGGGGCCG AAGTTTTAACCGAAATTGCTCGTTTTTGGGCTGATCGCGTCCATTTTTCAGCAGAAAATGGACAATATATGATTGCTGGA GTAACTGGTCCTGACGAATATCAAAATAACGTTGATAACAATTGGTATACCAATTTATTGGCGCGGTGGACACTCCGTTA TACCTTGGAAATTTTGGATCAAATCGAAGAGGATGTTGCCAAAAAAGTTAATGTATCGTCAGCAGAACGTCAACACTGGC AAGAAATTATCGATAATATGTATTTACCAGAAGATTCTAAGCGCGGAATCTTTGTCGAAAATGATGGTTTCTTAAATAAG GATTTGAAGCCAGTTAGTTCATTGCCAAAGGAACAATTACCGCTAAACCAAAATTGGTCTTGGGATAAAATTTTACGTTC ACCATATATTAAACAAGGGGATGTTCTTCAAGGAATTTGGGATTTCATTGACGATTTTTCAATGGAAGAAAAACAGCGGA ATTTTGATTTTTATGAACCACTAACTGTGCATGAATCTAGTTTATCGGCTGCTATTCACTCGGTTCTTGCGGCTGACTTA CACAAAGAGGCTCAAGCCGTTGAGATGTATGAACGTACCGCCCGCCTAGATTTAGATAATTATAATAATGATACTGCGGA TGGTCTGCATATTACGTCCATGACGGGTGGATGGTTAGCGATTGTTCAAGGTTTTGCAGGAATGCGGGTCCGTAATGATC AGCTGCATTATGCCCCATTCTTACCGAAAAATTGGACATCTTACCGATTTAGACAACAATTCCGCGGAAGAGTAATTGAA GTTAGTGTCGATAAAAGTGCAACAAATCTTAAATTGATTAGTGGTAGCCCACTAAGCGTTGATTTAAATGGTAAGAAAGT TGAATTAAGCTGA
Upstream 100 bases:
>100_bases TTCCTACTTGCTGGTGCAGTAATGCTTTTAGGAGCCTTCGCCGTAGGAACAATCAAAGAAACTTTTGCTGAATAATTAAA TATAGACAAGGAGAACAATC
Downstream 100 bases:
>100_bases GTGGAGGAATTAGGAATGAAATTTTCAGATATAAAGGGATTCGCTTTTGACCTTGATGGGGTTATTGCAGATACTGCGAA GTTTCACAGTCAGGCTTGGC
Product: maltose phosphorylase
Products: D-glucose; beta-D-glucose 1-phosphate
Alternate protein names: NA
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVWYPDKTRVGWWKNGYPKYFGK VINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAILTRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSD SKADIEVISAIDADVYNEDSNYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEWEQRWQKSDIEINGDAEAQQG IRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTEAFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLK GALYPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNMYLPEDSKRGIFVENDGFLNK DLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIWDFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADL HKEAQAVEMYERTARLDLDNYNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE VSVDKSATNLKLISGSPLSVDLNGKKVELS
Sequences:
>Translated_750_residues MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVWYPDKTRVGWWKNGYPKYFGK VINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAILTRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSD SKADIEVISAIDADVYNEDSNYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEWEQRWQKSDIEINGDAEAQQG IRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTEAFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLK GALYPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNMYLPEDSKRGIFVENDGFLNK DLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIWDFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADL HKEAQAVEMYERTARLDLDNYNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE VSVDKSATNLKLISGSPLSVDLNGKKVELS >Mature_750_residues MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVWYPDKTRVGWWKNGYPKYFGK VINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAILTRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSD SKADIEVISAIDADVYNEDSNYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEWEQRWQKSDIEINGDAEAQQG IRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTEAFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLK GALYPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNMYLPEDSKRGIFVENDGFLNK DLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIWDFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADL HKEAQAVEMYERTARLDLDNYNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE VSVDKSATNLKLISGSPLSVDLNGKKVELS
Specific function: Unknown
COG id: COG1554
COG function: function code G; Trehalose and maltose hydrolases (possible phosphorylases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 65 family [H]
Homologues:
Organism=Homo sapiens, GI187829418, Length=618, Percent_Identity=22.0064724919094, Blast_Score=127, Evalue=5e-29, Organism=Escherichia coli, GI1787575, Length=756, Percent_Identity=28.968253968254, Blast_Score=286, Evalue=3e-78, Organism=Saccharomyces cerevisiae, GI6325283, Length=315, Percent_Identity=24.7619047619048, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24583760, Length=299, Percent_Identity=27.7591973244147, Blast_Score=97, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR011013 - InterPro: IPR005194 - InterPro: IPR005195 - InterPro: IPR005196 - InterPro: IPR017045 [H]
Pfam domain/function: PF03633 Glyco_hydro_65C; PF03632 Glyco_hydro_65m; PF03636 Glyco_hydro_65N [H]
EC number: 2.4.1.8
Molecular weight: Translated: 86341; Mature: 86341
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVW CCEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE YPDKTRVGWWKNGYPKYFGKVINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAIL CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHH TRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSDSKADIEVISAIDADVYNEDS CEEEEEEECCEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCHHCCCCC NYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEECCEEECCCHHCCCCCCCHHCC QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEW CEEEEEECCCHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQRWQKSDIEINGDAEAQQGIRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTE HHHHCCCCEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEECCC AFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLKGALYPMVTFNGIECHNEWEI CEEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEEEEEECCEEECCCCCE TFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG EHHHHHCCCCEEEEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHEEEECCCCEEEEE VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNM CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC YLPEDSKRGIFVENDGFLNKDLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIW CCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHH DFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADLHKEAQAVEMYERTARLDLDN HHHHCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE CCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHCCEEEE VSVDKSATNLKLISGSPLSVDLNGKKVELS EEECCCCCEEEEEECCCEEEECCCCEEEEC >Mature Secondary Structure MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVW CCEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE YPDKTRVGWWKNGYPKYFGKVINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAIL CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHH TRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSDSKADIEVISAIDADVYNEDS CEEEEEEECCEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCHHCCCCC NYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEECCEEECCCHHCCCCCCCHHCC QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEW CEEEEEECCCHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQRWQKSDIEINGDAEAQQGIRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTE HHHHCCCCEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEECCC AFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLKGALYPMVTFNGIECHNEWEI CEEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEEEEEECCEEECCCCCE TFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG EHHHHHCCCCEEEEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHEEEECCCCEEEEE VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNM CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC YLPEDSKRGIFVENDGFLNKDLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIW CCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHH DFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADLHKEAQAVEMYERTARLDLDN HHHHCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE CCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHCCEEEE VSVDKSATNLKLISGSPLSVDLNGKKVELS EEECCCCCEEEEEECCCEEEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: maltose; phosphate
Specific reaction: maltose + phosphate = D-glucose + beta-D-glucose 1-phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]