| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492731
Identifier: 116492731
GI number: 116492731
Start: 973199
End: 974542
Strand: Reverse
Name: 116492731
Synonym: PEPE_0968
Alternate gene names: NA
Gene position: 974542-973199 (Counterclockwise)
Preceding gene: 116492732
Following gene: 116492730
Centisome position: 53.18
GC content: 38.91
Gene sequence:
>1344_bases TTGGCAGATAAGACAAGTGGGAAGGGTCTTCCGACGCTTTCCAAAAATTTGATTTGGATGATTAATTTTGGTTTTCTTGG TGTTCAAACTGCATTTACATTACAGAGTTCTCAAATGTCGCGTATTTTTCAAACGATTGGAGCGGATCCAAATAACTTAG GGTGGTTTTTCATTCTTCCACCTTTGGCAGGTTTGATTGTACAGCCTATTGTAGGTTACTACTCCGATCGAACTTGGAAA CCACGTTTAGGTGGTAGAAGGTTACCTTATCTAATTCTAGGAACCTTAATTGCTGTTATTGTGATGCTACTGCTACCGAA TTCAGGTAGTTTTGGATTTGGTTATGGTTCATTAATGGCACTTTGGTTTGGGGCGATTACGGTGGCTTTTCTAGACCTAT CTTCCAACGTTGCTATGCAACCATTTAAGATGATGATTGGCGACATGGTAAACGATAAACAAAAAAGTTATGCTTACGGG ATTCAAAGTTTTTTATCTAATACTGGTGCAGTTTTAGCAGCTATTTTTCCTTTCCTTTTAACTTGGTTGGGAATTGCTAA CACTGCGAATAAGGGCGTCGTTCCTCAATCAGTTGTTATTTCATTCTATGCAGGTGCAATTTTATTAATTATAACTAGTT TATTTACAGTATTTAGAGTAAAAGAATATGACCCAGCGACCTATGCGATGTATCACGGAATTAGTGAAAAAGAGAATAGT GAAGGTGGCAATTGGATTACGCTTTTAAAGAATGCACCTAAAGCATTTTGGACCGTCACGTTAGTACAATTCTTCTGTTG GTTCGCTTTCCAATACCTCTGGACATATTCAGCAGGTGCAATTGCTCAAAACGTTTGGCACACTGCTAATGCATCTTCGG CCGCATATCAAGCAGCGGGGAACTGGTACGGCGTTTTAGCAGCGGTTCAATCTATTGCAGCGGTAGCATGTTCATACGTT TTGGCTAAATTACCCAATCGATTCCATAAATCAGGTTATGCAGTTAGTTTAATTCTTGGTGCACTCGGTTTTGTATCCGT TTTCTTTGTTCATAATCAATACATTTTAATTGTTTCTTATATCCTAGTTGGAATTGCTTGGGCTGGAATGAATACTTACC CATTAACCATCGTGACAAATGCTTTATCTGGAAATCATATGGGAACTTACTTAGGATTATTCAACGGTTCAATTTGTTTA CCACAGATTGTGGCATCCCTACTTAGCTTTGGCTTATTCCCACTTCTCGGTAGCTCACAAGCTAATATGTTCCTACTTGC TGGTGCAGTAATGCTTTTAGGAGCCTTCGCCGTAGGAACAATCAAAGAAACTTTTGCTGAATAA
Upstream 100 bases:
>100_bases CGTTTGCACAAAATAAGTGCAAACGCTTGCACAATTTAAATCTCTATGTTAAATTAATAACATGAAAGCGCTTCATAAAA ATTAAAAGGGGTTGTTATCA
Downstream 100 bases:
>100_bases TTAAATATAGACAAGGAGAACAATCATGATTCGAACATTTAATATAGCACCTTGGCACATTGAAACTAATCAATGGGATC CCGAAAATAAAAGAATTCAA
Product: major facilitator superfamily permease
Products: NA
Alternate protein names: Sugar Transporter; Transporter Facilitator Family; Facilitator Superfamily Permease; Facilitator Superfamily Protein; SugarCation Symporter; Facilitator Superfamily Transporter Permease; MFS Superfamily Sugcific Permease; Cytoplasmic Membrane Maltose Transporter MalY; Transport Protein Facilitator Superfamily Protein; Facilitator Superfamily Transmembrane Protein; Facilitator Family Transporter; Sucrose Transporter Protein
Number of amino acids: Translated: 447; Mature: 446
Protein sequence:
>447_residues MADKTSGKGLPTLSKNLIWMINFGFLGVQTAFTLQSSQMSRIFQTIGADPNNLGWFFILPPLAGLIVQPIVGYYSDRTWK PRLGGRRLPYLILGTLIAVIVMLLLPNSGSFGFGYGSLMALWFGAITVAFLDLSSNVAMQPFKMMIGDMVNDKQKSYAYG IQSFLSNTGAVLAAIFPFLLTWLGIANTANKGVVPQSVVISFYAGAILLIITSLFTVFRVKEYDPATYAMYHGISEKENS EGGNWITLLKNAPKAFWTVTLVQFFCWFAFQYLWTYSAGAIAQNVWHTANASSAAYQAAGNWYGVLAAVQSIAAVACSYV LAKLPNRFHKSGYAVSLILGALGFVSVFFVHNQYILIVSYILVGIAWAGMNTYPLTIVTNALSGNHMGTYLGLFNGSICL PQIVASLLSFGLFPLLGSSQANMFLLAGAVMLLGAFAVGTIKETFAE
Sequences:
>Translated_447_residues MADKTSGKGLPTLSKNLIWMINFGFLGVQTAFTLQSSQMSRIFQTIGADPNNLGWFFILPPLAGLIVQPIVGYYSDRTWK PRLGGRRLPYLILGTLIAVIVMLLLPNSGSFGFGYGSLMALWFGAITVAFLDLSSNVAMQPFKMMIGDMVNDKQKSYAYG IQSFLSNTGAVLAAIFPFLLTWLGIANTANKGVVPQSVVISFYAGAILLIITSLFTVFRVKEYDPATYAMYHGISEKENS EGGNWITLLKNAPKAFWTVTLVQFFCWFAFQYLWTYSAGAIAQNVWHTANASSAAYQAAGNWYGVLAAVQSIAAVACSYV LAKLPNRFHKSGYAVSLILGALGFVSVFFVHNQYILIVSYILVGIAWAGMNTYPLTIVTNALSGNHMGTYLGLFNGSICL PQIVASLLSFGLFPLLGSSQANMFLLAGAVMLLGAFAVGTIKETFAE >Mature_446_residues ADKTSGKGLPTLSKNLIWMINFGFLGVQTAFTLQSSQMSRIFQTIGADPNNLGWFFILPPLAGLIVQPIVGYYSDRTWKP RLGGRRLPYLILGTLIAVIVMLLLPNSGSFGFGYGSLMALWFGAITVAFLDLSSNVAMQPFKMMIGDMVNDKQKSYAYGI QSFLSNTGAVLAAIFPFLLTWLGIANTANKGVVPQSVVISFYAGAILLIITSLFTVFRVKEYDPATYAMYHGISEKENSE GGNWITLLKNAPKAFWTVTLVQFFCWFAFQYLWTYSAGAIAQNVWHTANASSAAYQAAGNWYGVLAAVQSIAAVACSYVL AKLPNRFHKSGYAVSLILGALGFVSVFFVHNQYILIVSYILVGIAWAGMNTYPLTIVTNALSGNHMGTYLGLFNGSICLP QIVASLLSFGLFPLLGSSQANMFLLAGAVMLLGAFAVGTIKETFAE
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48492; Mature: 48361
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKTSGKGLPTLSKNLIWMINFGFLGVQTAFTLQSSQMSRIFQTIGADPNNLGWFFILP CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHH PLAGLIVQPIVGYYSDRTWKPRLGGRRLPYLILGTLIAVIVMLLLPNSGSFGFGYGSLMA HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH LWFGAITVAFLDLSSNVAMQPFKMMIGDMVNDKQKSYAYGIQSFLSNTGAVLAAIFPFLL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH TWLGIANTANKGVVPQSVVISFYAGAILLIITSLFTVFRVKEYDPATYAMYHGISEKENS HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC EGGNWITLLKNAPKAFWTVTLVQFFCWFAFQYLWTYSAGAIAQNVWHTANASSAAYQAAG CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHCC NWYGVLAAVQSIAAVACSYVLAKLPNRFHKSGYAVSLILGALGFVSVFFVHNQYILIVSY CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH ILVGIAWAGMNTYPLTIVTNALSGNHMGTYLGLFNGSICLPQIVASLLSFGLFPLLGSSQ HHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC ANMFLLAGAVMLLGAFAVGTIKETFAE CCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ADKTSGKGLPTLSKNLIWMINFGFLGVQTAFTLQSSQMSRIFQTIGADPNNLGWFFILP CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHH PLAGLIVQPIVGYYSDRTWKPRLGGRRLPYLILGTLIAVIVMLLLPNSGSFGFGYGSLMA HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH LWFGAITVAFLDLSSNVAMQPFKMMIGDMVNDKQKSYAYGIQSFLSNTGAVLAAIFPFLL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH TWLGIANTANKGVVPQSVVISFYAGAILLIITSLFTVFRVKEYDPATYAMYHGISEKENS HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC EGGNWITLLKNAPKAFWTVTLVQFFCWFAFQYLWTYSAGAIAQNVWHTANASSAAYQAAG CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHCC NWYGVLAAVQSIAAVACSYVLAKLPNRFHKSGYAVSLILGALGFVSVFFVHNQYILIVSY CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH ILVGIAWAGMNTYPLTIVTNALSGNHMGTYLGLFNGSICLPQIVASLLSFGLFPLLGSSQ HHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC ANMFLLAGAVMLLGAFAVGTIKETFAE CCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA