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The map label for this gene is ywbI [H]

Identifier: 116492720

GI number: 116492720

Start: 957566

End: 958537

Strand: Reverse

Name: ywbI [H]

Synonym: PEPE_0957

Alternate gene names: 116492720

Gene position: 958537-957566 (Counterclockwise)

Preceding gene: 116492721

Following gene: 116492719

Centisome position: 52.31

GC content: 37.96

Gene sequence:

>972_bases
ATGCAGACAAAAACAGAAAAGATTTTTTCATCTAAAACTTTGTCATATTTTTTAAGACTCACGGATACGATGAGCTACAC
ACAAAGCGCCCAACTTTTAGGAATTACACAGCCCGCCTTAACACAGCAGATTAAAAAACTTGAACATGCCGTAGGTGCGC
CATTATTCTACACCCTCGGCAAAAAACTTCGTTTAACTGACGCTGGATACACAATGTTGAATGCTACTCATGAAATCAAT
CGTATTTTGAACCATGCGACTGATGAGATTCAACAAGCAACAAGTAGCGGACGTGGTGATATTTCGGTTGGGATTTTAGC
TTCGCTTGAAACTCGTATTTTTGAAGATTTTATCGCTAACTATTACAATAATGTTCCTGAAATTAATGTAACTGTTCATA
TGCTCACGCGTTTTGAAATTTGGGAAGGTTTAGAAAGTAACCGATTAGACTTTGCAATTACATATCTTCCGGATGCTAAT
ATCCGTAGTTGGAAGCCTTACCGAGCACGTAAGATTGGAACAGAACGTTTAGTTTTTGTTCATCATGATGAACGTTTATC
AAAAGCACGGGGCGTAAGTTTAAAACGTGCAGCAGCTTTTGATTGGGTATCTTATCCAGAAGGTTATTATTTGGATGACC
TTATTACAGAAGTATTTAAGGATGCGATGGTAACTAAACCTAAGAGTGTTGCTTACTTTACAACCCCCGCTCAAATTTTG
AGTTTTTCGAATAGCACGGGGATCGCTACGGCATTACCGGAATCTTTTGTGGTAGCCCATCAAGACGAAGCAACTGATGC
TTATATAACTAAGTTTGACCCTAAGATTAGCTATGAAATTGGGTTTGTTTACAGAAAAGACAAAGACAAAATTCCACGGA
TGAACGCCTTTTTGAGTGCCTTCTTTGAATATATGGACGGCGAGAAGTATATTGATAAGGTACGTAACCTAACTACAAAA
AAAGATGATTAA

Upstream 100 bases:

>100_bases
AAATTAAGCAGATTATTACTTGCCCTTTATGAATACTAATATTAGACTTATTATTGGAGATTGTTAGTTCGTTTAGGCTA
ACTGAAAGGAGTGCTCTAGT

Downstream 100 bases:

>100_bases
AGGAGACTTTTTATAATGAATAAACAACTTGTTTTCGGACATTCTAATCCAGATACAGACGCAATCGTTGCTGCGAAGGC
CTTTGCATATTTACAAAATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MQTKTEKIFSSKTLSYFLRLTDTMSYTQSAQLLGITQPALTQQIKKLEHAVGAPLFYTLGKKLRLTDAGYTMLNATHEIN
RILNHATDEIQQATSSGRGDISVGILASLETRIFEDFIANYYNNVPEINVTVHMLTRFEIWEGLESNRLDFAITYLPDAN
IRSWKPYRARKIGTERLVFVHHDERLSKARGVSLKRAAAFDWVSYPEGYYLDDLITEVFKDAMVTKPKSVAYFTTPAQIL
SFSNSTGIATALPESFVVAHQDEATDAYITKFDPKISYEIGFVYRKDKDKIPRMNAFLSAFFEYMDGEKYIDKVRNLTTK
KDD

Sequences:

>Translated_323_residues
MQTKTEKIFSSKTLSYFLRLTDTMSYTQSAQLLGITQPALTQQIKKLEHAVGAPLFYTLGKKLRLTDAGYTMLNATHEIN
RILNHATDEIQQATSSGRGDISVGILASLETRIFEDFIANYYNNVPEINVTVHMLTRFEIWEGLESNRLDFAITYLPDAN
IRSWKPYRARKIGTERLVFVHHDERLSKARGVSLKRAAAFDWVSYPEGYYLDDLITEVFKDAMVTKPKSVAYFTTPAQIL
SFSNSTGIATALPESFVVAHQDEATDAYITKFDPKISYEIGFVYRKDKDKIPRMNAFLSAFFEYMDGEKYIDKVRNLTTK
KDD
>Mature_323_residues
MQTKTEKIFSSKTLSYFLRLTDTMSYTQSAQLLGITQPALTQQIKKLEHAVGAPLFYTLGKKLRLTDAGYTMLNATHEIN
RILNHATDEIQQATSSGRGDISVGILASLETRIFEDFIANYYNNVPEINVTVHMLTRFEIWEGLESNRLDFAITYLPDAN
IRSWKPYRARKIGTERLVFVHHDERLSKARGVSLKRAAAFDWVSYPEGYYLDDLITEVFKDAMVTKPKSVAYFTTPAQIL
SFSNSTGIATALPESFVVAHQDEATDAYITKFDPKISYEIGFVYRKDKDKIPRMNAFLSAFFEYMDGEKYIDKVRNLTTK
KDD

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=25.4295532646048, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=294, Percent_Identity=23.469387755102, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=306, Percent_Identity=22.8758169934641, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36906; Mature: 36906

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTKTEKIFSSKTLSYFLRLTDTMSYTQSAQLLGITQPALTQQIKKLEHAVGAPLFYTLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHCC
KKLRLTDAGYTMLNATHEINRILNHATDEIQQATSSGRGDISVGILASLETRIFEDFIAN
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHH
YYNNVPEINVTVHMLTRFEIWEGLESNRLDFAITYLPDANIRSWKPYRARKIGTERLVFV
HHCCCCCEEEEEEEEHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEE
HHDERLSKARGVSLKRAAAFDWVSYPEGYYLDDLITEVFKDAMVTKPKSVAYFTTPAQIL
ECCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHH
SFSNSTGIATALPESFVVAHQDEATDAYITKFDPKISYEIGFVYRKDKDKIPRMNAFLSA
CCCCCCCCCHHCCCHHEEEECCCCCCCEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHH
FFEYMDGEKYIDKVRNLTTKKDD
HHHHHCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQTKTEKIFSSKTLSYFLRLTDTMSYTQSAQLLGITQPALTQQIKKLEHAVGAPLFYTLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHCC
KKLRLTDAGYTMLNATHEINRILNHATDEIQQATSSGRGDISVGILASLETRIFEDFIAN
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHH
YYNNVPEINVTVHMLTRFEIWEGLESNRLDFAITYLPDANIRSWKPYRARKIGTERLVFV
HHCCCCCEEEEEEEEHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEE
HHDERLSKARGVSLKRAAAFDWVSYPEGYYLDDLITEVFKDAMVTKPKSVAYFTTPAQIL
ECCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHH
SFSNSTGIATALPESFVVAHQDEATDAYITKFDPKISYEIGFVYRKDKDKIPRMNAFLSA
CCCCCCCCCHHCCCHHEEEECCCCCCCEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHH
FFEYMDGEKYIDKVRNLTTKKDD
HHHHHCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]