Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
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Accession | NC_008525 |
Length | 1,832,387 |
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The map label for this gene is 116492420
Identifier: 116492420
GI number: 116492420
Start: 692419
End: 693078
Strand: Reverse
Name: 116492420
Synonym: PEPE_0650
Alternate gene names: NA
Gene position: 693078-692419 (Counterclockwise)
Preceding gene: 116492425
Following gene: 116492418
Centisome position: 37.82
GC content: 34.55
Gene sequence:
>660_bases ATGGTGATAATTACAGCAGGAATGATCGGCGTCGGTAAAACTACATTAACAGGGAAAATTGCTGACTACTATGGAACAAA GGCGTTCTACGAACCAGTTGGAGACAATCCCGTTTTACCACTCTATTATTCTGACCAAAAAAGTTATGGATTCTTACTTC AAATTTATTTTTTGAATAAACGATTCCAAATGATCAAAAAGGCTTTGACTGATGATAATAATGTATTAGACCGTTCAATC TACGAAGATGCTCTATTCACACGTGAAAACAACAAAGAAGGTAACATTACGGATACTGAATTTGAAGTTTACATGAACCT TCTTGATAACATGATGAGTGAGCTTCAAAATCTACCTAAGAAAGCACCAGATTTGATGGTCTATGCTGAAACAGATTTTG ATACCATCCTCTATCGTATTCGTAAACGTGGGCGTGACTATGAACAATTCGATAACAATCCTGAATTGGAATCTTACTAC TATAAGATGTGGTCAGCTTACAAGACATGGTACGAAGAATATGATGTTGGTCCTAAAATGAAAATTGATTTACAAAAGTA CGATTTAAGTAACGAAGAAAACGTTAAAATCATCCTTAAACAAATCAATGCTAAACTTAAAGAAGTTCGGGTTGAAGAAC CTATGCATAAAGCAATCTAA
Upstream 100 bases:
>100_bases TTGCGCTCCAATTCTTTATACAATATGTTGTGGCTGTTTAAAGATTTAGGATTTATTAATACTAGATTTCGGCAAAAAAA AATGGAAAAGGGAGCATTTT
Downstream 100 bases:
>100_bases TTTAAAATGACCTCAATTGTCGTTCCACTCTAGTTTAAAACTAAAGTGCCGACAATTGAGGTCATTTTGTTTATCATTTA ATTTTTAACAATCATAACGT
Product: deoxynucleoside kinase
Products: NA
Alternate protein names: DGK; DGUO kinase; Deoxynucleoside kinase complex I F-component [H]
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MVIITAGMIGVGKTTLTGKIADYYGTKAFYEPVGDNPVLPLYYSDQKSYGFLLQIYFLNKRFQMIKKALTDDNNVLDRSI YEDALFTRENNKEGNITDTEFEVYMNLLDNMMSELQNLPKKAPDLMVYAETDFDTILYRIRKRGRDYEQFDNNPELESYY YKMWSAYKTWYEEYDVGPKMKIDLQKYDLSNEENVKIILKQINAKLKEVRVEEPMHKAI
Sequences:
>Translated_219_residues MVIITAGMIGVGKTTLTGKIADYYGTKAFYEPVGDNPVLPLYYSDQKSYGFLLQIYFLNKRFQMIKKALTDDNNVLDRSI YEDALFTRENNKEGNITDTEFEVYMNLLDNMMSELQNLPKKAPDLMVYAETDFDTILYRIRKRGRDYEQFDNNPELESYY YKMWSAYKTWYEEYDVGPKMKIDLQKYDLSNEENVKIILKQINAKLKEVRVEEPMHKAI >Mature_219_residues MVIITAGMIGVGKTTLTGKIADYYGTKAFYEPVGDNPVLPLYYSDQKSYGFLLQIYFLNKRFQMIKKALTDDNNVLDRSI YEDALFTRENNKEGNITDTEFEVYMNLLDNMMSELQNLPKKAPDLMVYAETDFDTILYRIRKRGRDYEQFDNNPELESYY YKMWSAYKTWYEEYDVGPKMKIDLQKYDLSNEENVKIILKQINAKLKEVRVEEPMHKAI
Specific function: DGK/DAK plays an essential role in generating the deoxyribonucleotide precursors, dGTP and dATP, for DNA metabolism [H]
COG id: COG1428
COG function: function code F; Deoxynucleoside kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DCK/DGK family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002624 [H]
Pfam domain/function: PF01712 dNK [H]
EC number: =2.7.1.113 [H]
Molecular weight: Translated: 25880; Mature: 25880
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIITAGMIGVGKTTLTGKIADYYGTKAFYEPVGDNPVLPLYYSDQKSYGFLLQIYFLNK CEEEEECCEECCCCHHHCHHHHHHCCHHHCCCCCCCCEEEEEECCCCCCCEEEEEEHHHH RFQMIKKALTDDNNVLDRSIYEDALFTRENNKEGNITDTEFEVYMNLLDNMMSELQNLPK HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC KAPDLMVYAETDFDTILYRIRKRGRDYEQFDNNPELESYYYKMWSAYKTWYEEYDVGPKM CCCCEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE KIDLQKYDLSNEENVKIILKQINAKLKEVRVEEPMHKAI EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCC >Mature Secondary Structure MVIITAGMIGVGKTTLTGKIADYYGTKAFYEPVGDNPVLPLYYSDQKSYGFLLQIYFLNK CEEEEECCEECCCCHHHCHHHHHHCCHHHCCCCCCCCEEEEEECCCCCCCEEEEEEHHHH RFQMIKKALTDDNNVLDRSIYEDALFTRENNKEGNITDTEFEVYMNLLDNMMSELQNLPK HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC KAPDLMVYAETDFDTILYRIRKRGRDYEQFDNNPELESYYYKMWSAYKTWYEEYDVGPKM CCCCEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE KIDLQKYDLSNEENVKIILKQINAKLKEVRVEEPMHKAI EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7896798; 8172906 [H]