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The map label for this gene is oppC [H]

Identifier: 116492201

GI number: 116492201

Start: 443573

End: 444598

Strand: Direct

Name: oppC [H]

Synonym: PEPE_0398

Alternate gene names: 116492201

Gene position: 443573-444598 (Clockwise)

Preceding gene: 116492200

Following gene: 116492202

Centisome position: 24.21

GC content: 39.77

Gene sequence:

>1026_bases
ATGGAAGAAAAAGTGAACTTACCTAAAGATGCCTTTCAACCTGTTAGTAAGGGTGAACGTTTAGATGATGAAAAAATTAC
TGCCCCGTCGAGAACGTTTTTGCAAGACGCTTGGCGGCGTTTAAAGGAAAATAAAGCAGCCTTTATCAGTATGTGGATTT
TAATTATCGTTGCGATTTTTGCATTCACATCACCCATCACTGCTCCACATCCCAATAATTCTAATCCCGATTATGCTAAC
TTACCGGCTAAGGTTCCAGGAGTTAACATTAACGGCTTTAATGGAACAATTGTGCAAGGTGGGGAACGAATTGATGCTTA
TAAAGCTAATAAAGTTCCTTCAGATAAGTATTTCTACCTTGGAACAGATTATTTAGGACGTAGCTTAGCACAGCGAATCT
TACATGGGACGATGATTTCTCTATTGATTGGGGTTTTCGCAACCATCATTGATTTACTAATTGGGGTAGGGTACGGGATC
TTCTCGGCCTGGAAAGGTGGAAAAATCGATATTTTCATGCAGCGAATTATCGAAATTATGTCTTCCGTTCCTAATATTGT
AATTATGGTTCTGTTACTATTGGTTTTCAAAAATGGTGGGATTTTACCGATTGTATTAGCGATTGCGATTAACGAATGGA
CTACAATGGCACGACTAACTCGAGCCCAGACTCTAAGTTTGAAAAATCAAGAGTACATTCTAGCTGCCCAGTCGCTAGGT
GAATCGCCATGGAAAATCTCGGTTAAGCATTTGTTGCCTAACCTATCCAGTGTCATCATTATTCAAACTATGTTTACCAT
TCCAACGGCAATTTTCTTCGAAGCCTTCTTGAGTTATATCGGAATTGGTATTCAAGCTCCTACTGCATCACTAGGAACGT
TGATTAATGATGGGCAACGTAATTTCCAGTTCTTACCATTCCAAATGTGGTATCCGGCAATTGTTTTGGCCATTATCATG
ATTGCATTTAATATTTTAGCTGATGGACTCCGTGACGCTTTTGATCCACGGACAGCCCGTAGATAG

Upstream 100 bases:

>100_bases
TTGTACTCTGGTCTATTATGTTTAGTTCTATTATTAACAGATATCATCTATGGATTGATTGATCCACGAATTAGAATTAC
TGGAAAGGGGGAGTAATGTA

Downstream 100 bases:

>100_bases
GAGGAAATTGATTAATGAGTTCAAATAAAAAAGTACTTGAAGTAAAAAATTTAGCGATTGATTTCCATACCTATGCTGGA
ACGGTTAAAGCAATCCGAGA

Product: ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KC [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MEEKVNLPKDAFQPVSKGERLDDEKITAPSRTFLQDAWRRLKENKAAFISMWILIIVAIFAFTSPITAPHPNNSNPDYAN
LPAKVPGVNINGFNGTIVQGGERIDAYKANKVPSDKYFYLGTDYLGRSLAQRILHGTMISLLIGVFATIIDLLIGVGYGI
FSAWKGGKIDIFMQRIIEIMSSVPNIVIMVLLLLVFKNGGILPIVLAIAINEWTTMARLTRAQTLSLKNQEYILAAQSLG
ESPWKISVKHLLPNLSSVIIIQTMFTIPTAIFFEAFLSYIGIGIQAPTASLGTLINDGQRNFQFLPFQMWYPAIVLAIIM
IAFNILADGLRDAFDPRTARR

Sequences:

>Translated_341_residues
MEEKVNLPKDAFQPVSKGERLDDEKITAPSRTFLQDAWRRLKENKAAFISMWILIIVAIFAFTSPITAPHPNNSNPDYAN
LPAKVPGVNINGFNGTIVQGGERIDAYKANKVPSDKYFYLGTDYLGRSLAQRILHGTMISLLIGVFATIIDLLIGVGYGI
FSAWKGGKIDIFMQRIIEIMSSVPNIVIMVLLLLVFKNGGILPIVLAIAINEWTTMARLTRAQTLSLKNQEYILAAQSLG
ESPWKISVKHLLPNLSSVIIIQTMFTIPTAIFFEAFLSYIGIGIQAPTASLGTLINDGQRNFQFLPFQMWYPAIVLAIIM
IAFNILADGLRDAFDPRTARR
>Mature_341_residues
MEEKVNLPKDAFQPVSKGERLDDEKITAPSRTFLQDAWRRLKENKAAFISMWILIIVAIFAFTSPITAPHPNNSNPDYAN
LPAKVPGVNINGFNGTIVQGGERIDAYKANKVPSDKYFYLGTDYLGRSLAQRILHGTMISLLIGVFATIIDLLIGVGYGI
FSAWKGGKIDIFMQRIIEIMSSVPNIVIMVLLLLVFKNGGILPIVLAIAINEWTTMARLTRAQTLSLKNQEYILAAQSLG
ESPWKISVKHLLPNLSSVIIIQTMFTIPTAIFFEAFLSYIGIGIQAPTASLGTLINDGQRNFQFLPFQMWYPAIVLAIIM
IAFNILADGLRDAFDPRTARR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=314, Percent_Identity=35.6687898089172, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787054, Length=307, Percent_Identity=30.9446254071661, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1787760, Length=236, Percent_Identity=33.0508474576271, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788505, Length=338, Percent_Identity=27.5147928994083, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789889, Length=223, Percent_Identity=29.5964125560538, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1789964, Length=221, Percent_Identity=31.2217194570136, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787549, Length=216, Percent_Identity=22.6851851851852, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37876; Mature: 37876

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKVNLPKDAFQPVSKGERLDDEKITAPSRTFLQDAWRRLKENKAAFISMWILIIVAIF
CCCCCCCCHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFTSPITAPHPNNSNPDYANLPAKVPGVNINGFNGTIVQGGERIDAYKANKVPSDKYFYL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCHHCCCCCCCCCCCCEEEE
GTDYLGRSLAQRILHGTMISLLIGVFATIIDLLIGVGYGIFSAWKGGKIDIFMQRIIEIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SSVPNIVIMVLLLLVFKNGGILPIVLAIAINEWTTMARLTRAQTLSLKNQEYILAAQSLG
HHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCC
ESPWKISVKHLLPNLSSVIIIQTMFTIPTAIFFEAFLSYIGIGIQAPTASLGTLINDGQR
CCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
NFQFLPFQMWYPAIVLAIIMIAFNILADGLRDAFDPRTARR
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEEKVNLPKDAFQPVSKGERLDDEKITAPSRTFLQDAWRRLKENKAAFISMWILIIVAIF
CCCCCCCCHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFTSPITAPHPNNSNPDYANLPAKVPGVNINGFNGTIVQGGERIDAYKANKVPSDKYFYL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCHHCCCCCCCCCCCCEEEE
GTDYLGRSLAQRILHGTMISLLIGVFATIIDLLIGVGYGIFSAWKGGKIDIFMQRIIEIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SSVPNIVIMVLLLLVFKNGGILPIVLAIAINEWTTMARLTRAQTLSLKNQEYILAAQSLG
HHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCC
ESPWKISVKHLLPNLSSVIIIQTMFTIPTAIFFEAFLSYIGIGIQAPTASLGTLINDGQR
CCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
NFQFLPFQMWYPAIVLAIIMIAFNILADGLRDAFDPRTARR
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]