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The map label for this gene is oppB [H]

Identifier: 116492200

GI number: 116492200

Start: 442639

End: 443568

Strand: Direct

Name: oppB [H]

Synonym: PEPE_0397

Alternate gene names: 116492200

Gene position: 442639-443568 (Clockwise)

Preceding gene: 116492199

Following gene: 116492201

Centisome position: 24.16

GC content: 38.82

Gene sequence:

>930_bases
ATGGCAAGATATCTTGCAAGACGTGTTTTTTACTTGCTACTGACCCTGTTCTTGATTGCCAGCATTACGTTCTTTTTAAT
GAAGTTAATGCCTGGTACACCATTGAATAATCAAGCAAAGTTAACAAAAGCGCAAATTCAGATTATTTATGAACAATATG
GGCTTAATAAGCCGGTGTGGCAACAATACTTGAGCTACATGATTAACGCAGTGCATGGAGATTTCGGAACTTCATTCCAG
TTTAGTAATCAAGAGGTTTCTTACTTAATTGGTAGTCGAATTGGACCTTCTGCAACCATCGGGATTCAGGGAATGATTCT
AGGTGTGGTTTTTGGAACCATTACTGGATCAATTAGTGCCATTCGCAAAAATACTTGGGTTGATGGAACTGCTAATATTA
TTTCGATTCTAGGACTTTCTGTACCAAGTTTTGTTTTGGCGATTGTGCTCCAATACTACATCGGACTTAAATTACAATGG
CTTCCAGTAGCCGGATGGGGTGGGTTTGCCAGTACAGTCCTTCCATCAATTGCTTTGGCAGCTAATCCCTTTGCAACCAC
TTCTCGTTTTGTGAGAACCGAAATGGTAGATGTCTTAGGAAGTGACTATATTGAACTTGCTAGAGCGAAAGGGATGAGCA
AAATGGGAATAGTTTTCCATCATGCTTTGCGTAATAGTTTGATTCCATTAGTTACCGTAGTGGGTCCATTAGCCGTCGCT
ATTATGACTGGTTCAATGGTTGTGGAAAATATTTTCTCAATTCCAGGAATTGGGGAACAATTCGTTAAGTCAATCTTAAC
TAACGACTATCCAACTATTATGGGTGTAACCATGTTGTACTCTGGTCTATTATGTTTAGTTCTATTATTAACAGATATCA
TCTATGGATTGATTGATCCACGAATTAGAATTACTGGAAAGGGGGAGTAA

Upstream 100 bases:

>100_bases
ATATCAAATAATTAAAAATGGGAACAAATTACATTGGGTGAGAGTGATACATTGCTCTTACCCTTTGTGCATATTGGACC
AGAGATTGTGAGGGAGATTT

Downstream 100 bases:

>100_bases
TGTAATGGAAGAAAAAGTGAACTTACCTAAAGATGCCTTTCAACCTGTTAGTAAGGGTGAACGTTTAGATGATGAAAAAA
TTACTGCCCCGTCGAGAACG

Product: ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KB [H]

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MARYLARRVFYLLLTLFLIASITFFLMKLMPGTPLNNQAKLTKAQIQIIYEQYGLNKPVWQQYLSYMINAVHGDFGTSFQ
FSNQEVSYLIGSRIGPSATIGIQGMILGVVFGTITGSISAIRKNTWVDGTANIISILGLSVPSFVLAIVLQYYIGLKLQW
LPVAGWGGFASTVLPSIALAANPFATTSRFVRTEMVDVLGSDYIELARAKGMSKMGIVFHHALRNSLIPLVTVVGPLAVA
IMTGSMVVENIFSIPGIGEQFVKSILTNDYPTIMGVTMLYSGLLCLVLLLTDIIYGLIDPRIRITGKGE

Sequences:

>Translated_309_residues
MARYLARRVFYLLLTLFLIASITFFLMKLMPGTPLNNQAKLTKAQIQIIYEQYGLNKPVWQQYLSYMINAVHGDFGTSFQ
FSNQEVSYLIGSRIGPSATIGIQGMILGVVFGTITGSISAIRKNTWVDGTANIISILGLSVPSFVLAIVLQYYIGLKLQW
LPVAGWGGFASTVLPSIALAANPFATTSRFVRTEMVDVLGSDYIELARAKGMSKMGIVFHHALRNSLIPLVTVVGPLAVA
IMTGSMVVENIFSIPGIGEQFVKSILTNDYPTIMGVTMLYSGLLCLVLLLTDIIYGLIDPRIRITGKGE
>Mature_308_residues
ARYLARRVFYLLLTLFLIASITFFLMKLMPGTPLNNQAKLTKAQIQIIYEQYGLNKPVWQQYLSYMINAVHGDFGTSFQF
SNQEVSYLIGSRIGPSATIGIQGMILGVVFGTITGSISAIRKNTWVDGTANIISILGLSVPSFVLAIVLQYYIGLKLQWL
PVAGWGGFASTVLPSIALAANPFATTSRFVRTEMVDVLGSDYIELARAKGMSKMGIVFHHALRNSLIPLVTVVGPLAVAI
MTGSMVVENIFSIPGIGEQFVKSILTNDYPTIMGVTMLYSGLLCLVLLLTDIIYGLIDPRIRITGKGE

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=38.0327868852459, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1787053, Length=305, Percent_Identity=37.3770491803279, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=30.5637982195846, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=32.1543408360129, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=31.3609467455621, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=26.007326007326, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788504, Length=367, Percent_Identity=25.0681198910082, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33758; Mature: 33626

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYLARRVFYLLLTLFLIASITFFLMKLMPGTPLNNQAKLTKAQIQIIYEQYGLNKPVW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
QQYLSYMINAVHGDFGTSFQFSNQEVSYLIGSRIGPSATIGIQGMILGVVFGTITGSISA
HHHHHHHHHHHHCCCCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IRKNTWVDGTANIISILGLSVPSFVLAIVLQYYIGLKLQWLPVAGWGGFASTVLPSIALA
HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
ANPFATTSRFVRTEMVDVLGSDYIELARAKGMSKMGIVFHHALRNSLIPLVTVVGPLAVA
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMTGSMVVENIFSIPGIGEQFVKSILTNDYPTIMGVTMLYSGLLCLVLLLTDIIYGLIDP
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIRITGKGE
CEEEECCCC
>Mature Secondary Structure 
ARYLARRVFYLLLTLFLIASITFFLMKLMPGTPLNNQAKLTKAQIQIIYEQYGLNKPVW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
QQYLSYMINAVHGDFGTSFQFSNQEVSYLIGSRIGPSATIGIQGMILGVVFGTITGSISA
HHHHHHHHHHHHCCCCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IRKNTWVDGTANIISILGLSVPSFVLAIVLQYYIGLKLQWLPVAGWGGFASTVLPSIALA
HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
ANPFATTSRFVRTEMVDVLGSDYIELARAKGMSKMGIVFHHALRNSLIPLVTVVGPLAVA
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMTGSMVVENIFSIPGIGEQFVKSILTNDYPTIMGVTMLYSGLLCLVLLLTDIIYGLIDP
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIRITGKGE
CEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]