| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492156
Identifier: 116492156
GI number: 116492156
Start: 398927
End: 401290
Strand: Direct
Name: 116492156
Synonym: PEPE_0353
Alternate gene names: NA
Gene position: 398927-401290 (Clockwise)
Preceding gene: 116492155
Following gene: 116492160
Centisome position: 21.77
GC content: 39.55
Gene sequence:
>2364_bases ATGACAGATTATTCATCAAAAGAATATTTTGACAAGCTTGAAAAATTTTGGCGTGCTGCTAACTATCTTTCAGTAGGACA ATTATATTTAAAAGACAATCCGCTATTAAAACGCGACATTAAACCAGAAGATGTAAAAGTTCATCCAATTGGACACTGGG GAACAATTCCTGGACAAAACTACATCTATGCTCATTTAAACCGTGTTATCAACAAATACGGTGTAAACATGTTTTATGTT GAAGGACCAGGTCATGGTGGCCAAGTTATGGTATCTAACTCATACCTTGATGGTTCATACACTGAAGCATACCCAGCTAT CACTCAAGATGAAGAAGGTATGAAGAAACTCTTCAAACAATTCTCATGGCCCGGTGGGGTTGCTTCACATGCTGCTCCTG TAACACCAGGTTCAATTCATGAAGGTGGGGAACTTGGTTACTCATTATCACATGGTGTTGGTGCTATCTTAGATAACCCA GACCAAATCGCTGCTGTTGTAGTTGGTGATGGTGAAGCTGAAACAGGTCCTTTGGCTGCTTCATGGCAACATAACCGTTT CATCAACCCTATTACTGATGGTGCTGTTCTTCCTATTTTGGATATTAACGGCTATAAGTTAAGTAACCCTTCACTTACAT CACGTATGTCAGATGAAGAATTAACTGAATTCTTCCATGGTCAACATTGGGACCCATACTTTGTTGAAGGTGATGATTCA GAAGCTATGGATCCTAAGATGGCTGAAGTAATGGACAAGGCTATCGAAAAGATTCAAGAAATTCAAAAGAATGCTCGTGA AAACCACGATGAAACTATGCCATACTGGCCAGTAATTGTATTCCGTTCACCTAAGGGTTGGACAGGTCCAAAGACTTGGG ATAACAAGGTTATTGAAGGTACATTCCGTGCTCATCAAATTCCAATCCCAGTAGACCAAAAGAACCTTGAACATGTTGAT GCTTTGATTGACTGGATGAAGTCATACAAGCCAGAAGAACTATTTGATGAAAATGGTCGCGTATTACCTGAAATTGCAGA AATTGCACCTAAGGGTGAAAAACGTATGGCATCTAACCCAATCACAAACGGTGGAGTTAACCCAACTGACTTGAACTTGC CAGATTATCGTGACTACGCTGTTGATACAACAAAACGTGGACAAAACATCAAACAAGATATGTTGGTATGGTCAGACTAC TTACGCGATGTTATAACTAAGAACCCAACTAACTTCAGAATGTTTGGTCCTGATGAAACAATGTCAAACCGTCTATATGG TTTGTTTGAAGTTACAAATCGTCAATTTGTTGCTCCAATCAAGAAGGACTGGGATGAAGCACTTGCTCCTGAAGGTCGTA TTCTTGATGCTCAACTTTCAGAACATTCAGCTGAAGGTTGGCTAGAAACATACACATTGACTGGTCGTCATGGTATCTTC ACTAGTTACGAAGCATTCCTACGCGTTGTGGATTCAATGATTACACAACACTTCAAGTGGTTACGTAAGGCTGATGAATT AGATTGGCGTAATGATTATCCATCATTGAACCTTGTATCTACATCAACTAGTTTCCAACAAGATCACAATGGTTACACTC ACCAAGATCCAGGTCTTTTGACTCACTTGGCTGAAAAGAAACCAGAATTCATTCGTGAATACTTGCCAGCTGATGCAAAC TCATTGCTTGCTATTAGCCCACTAGTTATGAACGATCGTAACAAGATCAACTTGATTATTGCTTCTAAGCAACCTCGTCC TCAATTCTACTCAATGGAAGAAGCAGAAGTTCTTGCTAAGAACGGTTTGGGTATTATTGACTGGGCAAGCACAACTAATG GTGAAGAACCAGACGTTGTCTTCGCTGCTGCTGGTACAGAACCAAATATGGAAAGTTTAGCTGCAATCAACATCTTGCAT GATAACTTCCCAGACTTGAAGATTCGTTTCATCAACGTTGTTGACTTATTGAAACTTCAAAGTCCTAAGGTTAACCCTAA TGGTCTAAGTGATGAAGAATTTGATCGTTACTTTACTAAGGACAAACCAGTTATCTTTACTTTCCATGGTTTCGAAGACT TAATTCGTTCAATCTTCTTTGACCGTCATAACCATAACTTACACGTTCATGGTTACCGTGAAGAAGGGGACATTACAACT CCATTCGACATGCGAGTTCTTAACGAACTAGATCGTTTCCACTTAGCACAAGATACAATCAATTCTATTCCAGAATTTGC TGAAAAGGGTGCAGACTTCTCTCAACAAATGGATAACACACTTGAACGTCATTACCAATACATTCGTGATAACGGTGATG ATCTTCCAGAAGTTACTAACTGGACTTGGAAAGATGTTAACTAA
Upstream 100 bases:
>100_bases GTATCAATTTAAAAAATGATTGACCTTTTTTGAGAAAGCGGTTATAATAAATTCATAAATTAAAAACAACCTATTTTTCG CTCACGAAAGGAAGAGTACA
Downstream 100 bases:
>100_bases TTAAATCAAAACAAAAAAGCTGAAAGCTTTGCCAATAGGGCATAGCTTCCAGCTTTTTTATTTAGTTAAAAAATTAAAAT AATCGGGTATAGGAGCAGTG
Product: putative phosphoketolase
Products: acetyl phosphate; D-glyceraldehyde 3-phosphate; H2O
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MTDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQNYIYAHLNRVINKYGVNMFYV EGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQFSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNP DQIAAVVVGDGEAETGPLAASWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEGTFRAHQIPIPVDQKNLEHVD ALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNPITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDY LRDVITKNPTNFRMFGPDETMSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLLTHLAEKKPEFIREYLPADAN SLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAKNGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILH DNFPDLKIRFINVVDLLKLQSPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTNWTWKDVN
Sequences:
>Translated_787_residues MTDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQNYIYAHLNRVINKYGVNMFYV EGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQFSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNP DQIAAVVVGDGEAETGPLAASWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEGTFRAHQIPIPVDQKNLEHVD ALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNPITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDY LRDVITKNPTNFRMFGPDETMSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLLTHLAEKKPEFIREYLPADAN SLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAKNGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILH DNFPDLKIRFINVVDLLKLQSPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTNWTWKDVN >Mature_786_residues TDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQNYIYAHLNRVINKYGVNMFYVE GPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQFSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPD QIAAVVVGDGEAETGPLAASWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDSE AMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEGTFRAHQIPIPVDQKNLEHVDA LIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNPITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDYL RDVITKNPTNFRMFGPDETMSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIFT SYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLLTHLAEKKPEFIREYLPADANS LLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAKNGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILHD NFPDLKIRFINVVDLLKLQSPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITTP FDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTNWTWKDVN
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PHK_PEDPA (Q03H73)
Other databases:
- EMBL: CP000422 - RefSeq: YP_803891.1 - STRING: Q03H73 - GeneID: 4418459 - GenomeReviews: CP000422_GR - KEGG: ppe:PEPE_0353 - NMPDR: fig|278197.10.peg.327 - eggNOG: COG3957 - HOGENOM: HBG285855 - OMA: VIDETQH - ProtClustDB: PRK05261 - BioCyc: PPEN278197:PEPE_0353-MONOMER - HAMAP: MF_01403 - InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 - PIRSF: PIRSF017245
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N; SSF52922 Transketo_C_like
EC number: 4.1.2.9
Molecular weight: Translated: 89725; Mature: 89594
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS60002 PHOSPHOKETOLASE_1; PS60003 PHOSPHOKETOLASE_2; PS00187 TPP_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQN CCCCCHHHHHHHHHHHHHHHCHHHHCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC YIYAHLNRVINKYGVNMFYVEGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQ HHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH FSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPDQIAAVVVGDGEAETGPLAA CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCEEECCCCCEEEEEEECCCCCCCCEEE SWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS CCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHHCCCHHHHHHHHCCCCCCCEEEECCCC EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEG CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEC TFRAHQIPIPVDQKNLEHVDALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNP CHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHCCCCCHHHHCCC ITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDYLRDVITKNPTNFRMFGPDET CCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH MSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF HHCCEEEEEEECCCEEECHHHHHHHHHHCCCCCEEECHHHHCCCCCCEEEEEECCCCCCH TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCHHH THLAEKKPEFIREYLPADANSLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAK HHHHHCCHHHHHHHCCCCCCCEEEECCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHH NGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILHDNFPDLKIRFINVVDLLKLQ CCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHEEEHHHCCCCCCEEEEEHHHHHHHHC SPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT CCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTN CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC WTWKDVN CEECCCC >Mature Secondary Structure TDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQN CCCCHHHHHHHHHHHHHHHCHHHHCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC YIYAHLNRVINKYGVNMFYVEGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQ HHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH FSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPDQIAAVVVGDGEAETGPLAA CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCEEECCCCCEEEEEEECCCCCCCCEEE SWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS CCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHHCCCHHHHHHHHCCCCCCCEEEECCCC EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEG CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEC TFRAHQIPIPVDQKNLEHVDALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNP CHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHCCCCCHHHHCCC ITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDYLRDVITKNPTNFRMFGPDET CCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH MSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF HHCCEEEEEEECCCEEECHHHHHHHHHHCCCCCEEECHHHHCCCCCCEEEEEECCCCCCH TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCHHH THLAEKKPEFIREYLPADANSLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAK HHHHHCCHHHHHHHCCCCCCCEEEECCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHH NGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILHDNFPDLKIRFINVVDLLKLQ CCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHEEEHHHCCCCCCEEEEEHHHHHHHHC SPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT CCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTN CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC WTWKDVN CEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-xylulose 5-phosphate; phosphate
Specific reaction: D-xylulose 5-phosphate + phosphate = acetyl phosphate + D-glyceraldehyde 3-phosphate + H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA