Click here to switch to the map view.

The map label for this gene is 116492127

Identifier: 116492127

GI number: 116492127

Start: 373515

End: 374369

Strand: Direct

Name: 116492127

Synonym: PEPE_0324

Alternate gene names: NA

Gene position: 373515-374369 (Clockwise)

Preceding gene: 116492126

Following gene: 116492129

Centisome position: 20.38

GC content: 36.61

Gene sequence:

>855_bases
ATGCAAAACAAAAATAGCAAAGATCGTTTGTATGAAGATATTGGTCTACTCCTACTTTTATTAATGCTTAGCATTACGGC
CGTTTTGATGATGCTTTCTCAAAACATCGTTGTGAATATAATTTATTTAATCATCACTATGGGAATTTTAATTGTAACTT
ACTTTATGGGAATTATTCCCAGCTTATTAGCAAATATGGTGTTTATTGCTTTCCAAACCGTAGTTATGTTGTATGAATAT
TTTGGTTTGAATCACGAAATTCAGTGGTCGTTGCTTTTCTGGCTAATCATGCCGTTGTTGATTTCACTGACCATGTATCT
TTCAACACGGAGTCAGATTGCGTTGCAAAAGGCGAATAGTGATTTACATGCGGCTTTGGTAGAGCGGGGCGCCTTTGATC
AACAAACTAATTTGCGGACGATGGTTGCATATGTGGAAGATGCCGGAGTATTTATTGAAACTAGTCGACGCTTTGAGATT
CCCGTATCCACGCTAATTATTAAAATAAGATATTTTAATGATTTACGGAGAATGATGAGTGATCGCCAACTTCAGCTTTT
ATTACAAATTGCTTCAGAGGTAATCAAAAGTTCGACGCGTGATAATGATATTACCTATATTTTGGAAAATGAAGATCCGA
CGTGGGCGATTCTTTTGTACACTAATGCTACTGGAGGAAGAATCGCTGGACAACGGGCTAAAGATGCGTTTGAAAAACGG
ATTAAGGAAAGCTCAGAGTTAGTGAATCTCGCTATTTCAATGGTTGTGGGTGTTTCAGAATGGAACGCAGAGGAAATGAG
TAATCCATATGATTTAATGAATGATGGAATTAAAGAAACTCAATATGATGTTTAG

Upstream 100 bases:

>100_bases
ATTATTTATTTGGGAATTGTCTTTTTAGCTTTGATTGTCATTGGTTTTGGAGTTTACCTAGTTTTTAGAAAGCAAGCCAT
GATGAATGGAGGTCGTAAGA

Downstream 100 bases:

>100_bases
AGCAGCATAAAAAAGAACCTTAACTTCAGAAAAAGAAGTTAAGGCTCTTTATTTTTATTAGCAAATTTTATTACCAATAT
CTTTCATATCTTTAGCGAGT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MQNKNSKDRLYEDIGLLLLLLMLSITAVLMMLSQNIVVNIIYLIITMGILIVTYFMGIIPSLLANMVFIAFQTVVMLYEY
FGLNHEIQWSLLFWLIMPLLISLTMYLSTRSQIALQKANSDLHAALVERGAFDQQTNLRTMVAYVEDAGVFIETSRRFEI
PVSTLIIKIRYFNDLRRMMSDRQLQLLLQIASEVIKSSTRDNDITYILENEDPTWAILLYTNATGGRIAGQRAKDAFEKR
IKESSELVNLAISMVVGVSEWNAEEMSNPYDLMNDGIKETQYDV

Sequences:

>Translated_284_residues
MQNKNSKDRLYEDIGLLLLLLMLSITAVLMMLSQNIVVNIIYLIITMGILIVTYFMGIIPSLLANMVFIAFQTVVMLYEY
FGLNHEIQWSLLFWLIMPLLISLTMYLSTRSQIALQKANSDLHAALVERGAFDQQTNLRTMVAYVEDAGVFIETSRRFEI
PVSTLIIKIRYFNDLRRMMSDRQLQLLLQIASEVIKSSTRDNDITYILENEDPTWAILLYTNATGGRIAGQRAKDAFEKR
IKESSELVNLAISMVVGVSEWNAEEMSNPYDLMNDGIKETQYDV
>Mature_284_residues
MQNKNSKDRLYEDIGLLLLLLMLSITAVLMMLSQNIVVNIIYLIITMGILIVTYFMGIIPSLLANMVFIAFQTVVMLYEY
FGLNHEIQWSLLFWLIMPLLISLTMYLSTRSQIALQKANSDLHAALVERGAFDQQTNLRTMVAYVEDAGVFIETSRRFEI
PVSTLIIKIRYFNDLRRMMSDRQLQLLLQIASEVIKSSTRDNDITYILENEDPTWAILLYTNATGGRIAGQRAKDAFEKR
IKESSELVNLAISMVVGVSEWNAEEMSNPYDLMNDGIKETQYDV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32549; Mature: 32549

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKNSKDRLYEDIGLLLLLLMLSITAVLMMLSQNIVVNIIYLIITMGILIVTYFMGIIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLANMVFIAFQTVVMLYEYFGLNHEIQWSLLFWLIMPLLISLTMYLSTRSQIALQKANS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DLHAALVERGAFDQQTNLRTMVAYVEDAGVFIETSRRFEIPVSTLIIKIRYFNDLRRMMS
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCEECCHHHHHHHHHHHHHHHHHHH
DRQLQLLLQIASEVIKSSTRDNDITYILENEDPTWAILLYTNATGGRIAGQRAKDAFEKR
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
IKESSELVNLAISMVVGVSEWNAEEMSNPYDLMNDGIKETQYDV
HHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCHHHHCCCC
>Mature Secondary Structure
MQNKNSKDRLYEDIGLLLLLLMLSITAVLMMLSQNIVVNIIYLIITMGILIVTYFMGIIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLANMVFIAFQTVVMLYEYFGLNHEIQWSLLFWLIMPLLISLTMYLSTRSQIALQKANS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DLHAALVERGAFDQQTNLRTMVAYVEDAGVFIETSRRFEIPVSTLIIKIRYFNDLRRMMS
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCEECCHHHHHHHHHHHHHHHHHHH
DRQLQLLLQIASEVIKSSTRDNDITYILENEDPTWAILLYTNATGGRIAGQRAKDAFEKR
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
IKESSELVNLAISMVVGVSEWNAEEMSNPYDLMNDGIKETQYDV
HHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA