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The map label for this gene is ydaM [H]

Identifier: 116492125

GI number: 116492125

Start: 370222

End: 371466

Strand: Direct

Name: ydaM [H]

Synonym: PEPE_0322

Alternate gene names: 116492125

Gene position: 370222-371466 (Clockwise)

Preceding gene: 116492124

Following gene: 116492126

Centisome position: 20.2

GC content: 37.43

Gene sequence:

>1245_bases
TTGGATTTTTTCCTAATGGTAGCTATCATTGCCATTTGGGGAACATTAATAATTAATTTGATTTTAACGGTAGCTGGATA
TACGTGGTATCTCCAAGAAGCTCCCAAACCGGATAAGCAACTTCCTGAAAAGATTCCCTTTGTGACGGTGATGGTACCTG
CACATAATGAAGGAATCGTAATTGTTAAAACTGTTTTATCGTTGCTCAGTTTTGACTACCCCCATGATCACTATGAGATC
ATTGTAATTAATGACAATTCAAGTGATAATTCGGCAGAGTTATTAAAAGAAGTCCAAAATGATTTTGGCGAAGAACGTTT
GAAAGTTATTAATACAGATAATGTTACGGGAGGAAAAGGCAAGTCCAATGCCCTAAATATTGGTTTGAAGCAAGCCAAAG
GAAGTGTTATTGCAATTTATGATGCAGATAACACTCCAGAACGAGGTGCGCTTCGTCTTTTAGTAGCAGAACTTTTAGGA
AATGACCGTTTAGCGGCGGTTATTGGAAAGTTTAGAACTAGAAATAAAGAAGCAACTATTTTAACCAGATTTATTAATAT
TGAAACACTTTCGTTTCAATGGATGGCTCAAGCGGGACGTCAACGGCTGTTTAAACTATGTACGATTCCAGGAACCAATT
ATGTTATTAGACGCGAAATTTTAGAAAAAATTGGTGGTTGGGATGTTAAAGCCTTAGCGGAAGATACGGAAATTAGTTTT
CGGGTCTACCAGATGGGATATCAAATTAAGTTTCAGCCGCGTGCGGTTACTTGGGAACAGGAACCACAAACCTTAGATGT
GTGGTTCCATCAGCGAACGCGCTGGGTGAAAGGAAACATTTACGTGGTCGTTAAAAATGCCAAATTACTCTTTAAAAAGG
CCGGACGTCCCATTCGCTTTGACTTACTCTATTTCTTGTCAACGTACTTTTTATTGATGACCGCTTTGATTCTATCTGAT
GTAGTTTTTGTTCTTTCAGTCGCTGGGTTGGCTCATTCAGATTTACAAGGTTTTAGTAATGCTTTGTGGTTATTTGGAAT
AATAATGTTTATCATCAGTACCTTTGTCACGGTTACAACCGAAAAGGGTGAAATGCGTTTTAGCAATATTCTTTATATTA
TTTTTATGTATTTGGTATACAGTCAAATGTGGTTAGCAGTCGCAGCATACGGAATGGTGGGGTATATTCGTGAACAAGTC
TTTCATAAACAAGCAAAATGGTATAAAACTAAGCGGTATAAGTAA

Upstream 100 bases:

>100_bases
CTTCGCCATTATCTTTACCGTCTTAATCATTTTTATCGCCTTTGGAAGAAAAATTTACAAGAATATGTTCAAGAGATAGG
AGGAGTGAATCATCACAATT

Downstream 100 bases:

>100_bases
ATTAATTATTTTAACATTAACGATATTATTAATGTCATTAGTTGGCGTGGGCCAAGTACATGCTGAAGACCTAACTTATA
CTCAAAATTTTCAAAATGAT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MDFFLMVAIIAIWGTLIINLILTVAGYTWYLQEAPKPDKQLPEKIPFVTVMVPAHNEGIVIVKTVLSLLSFDYPHDHYEI
IVINDNSSDNSAELLKEVQNDFGEERLKVINTDNVTGGKGKSNALNIGLKQAKGSVIAIYDADNTPERGALRLLVAELLG
NDRLAAVIGKFRTRNKEATILTRFINIETLSFQWMAQAGRQRLFKLCTIPGTNYVIRREILEKIGGWDVKALAEDTEISF
RVYQMGYQIKFQPRAVTWEQEPQTLDVWFHQRTRWVKGNIYVVVKNAKLLFKKAGRPIRFDLLYFLSTYFLLMTALILSD
VVFVLSVAGLAHSDLQGFSNALWLFGIIMFIISTFVTVTTEKGEMRFSNILYIIFMYLVYSQMWLAVAAYGMVGYIREQV
FHKQAKWYKTKRYK

Sequences:

>Translated_414_residues
MDFFLMVAIIAIWGTLIINLILTVAGYTWYLQEAPKPDKQLPEKIPFVTVMVPAHNEGIVIVKTVLSLLSFDYPHDHYEI
IVINDNSSDNSAELLKEVQNDFGEERLKVINTDNVTGGKGKSNALNIGLKQAKGSVIAIYDADNTPERGALRLLVAELLG
NDRLAAVIGKFRTRNKEATILTRFINIETLSFQWMAQAGRQRLFKLCTIPGTNYVIRREILEKIGGWDVKALAEDTEISF
RVYQMGYQIKFQPRAVTWEQEPQTLDVWFHQRTRWVKGNIYVVVKNAKLLFKKAGRPIRFDLLYFLSTYFLLMTALILSD
VVFVLSVAGLAHSDLQGFSNALWLFGIIMFIISTFVTVTTEKGEMRFSNILYIIFMYLVYSQMWLAVAAYGMVGYIREQV
FHKQAKWYKTKRYK
>Mature_414_residues
MDFFLMVAIIAIWGTLIINLILTVAGYTWYLQEAPKPDKQLPEKIPFVTVMVPAHNEGIVIVKTVLSLLSFDYPHDHYEI
IVINDNSSDNSAELLKEVQNDFGEERLKVINTDNVTGGKGKSNALNIGLKQAKGSVIAIYDADNTPERGALRLLVAELLG
NDRLAAVIGKFRTRNKEATILTRFINIETLSFQWMAQAGRQRLFKLCTIPGTNYVIRREILEKIGGWDVKALAEDTEISF
RVYQMGYQIKFQPRAVTWEQEPQTLDVWFHQRTRWVKGNIYVVVKNAKLLFKKAGRPIRFDLLYFLSTYFLLMTALILSD
VVFVLSVAGLAHSDLQGFSNALWLFGIIMFIISTFVTVTTEKGEMRFSNILYIIFMYLVYSQMWLAVAAYGMVGYIREQV
FHKQAKWYKTKRYK

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=393, Percent_Identity=25.4452926208651, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082284, Length=375, Percent_Identity=25.6, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786560, Length=305, Percent_Identity=25.5737704918033, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 47489; Mature: 47489

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFLMVAIIAIWGTLIINLILTVAGYTWYLQEAPKPDKQLPEKIPFVTVMVPAHNEGIV
CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHCHHHCCEEEEEEECCCCCEE
IVKTVLSLLSFDYPHDHYEIIVINDNSSDNSAELLKEVQNDFGEERLKVINTDNVTGGKG
EHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCHHHEEEEECCCCCCCCC
KSNALNIGLKQAKGSVIAIYDADNTPERGALRLLVAELLGNDRLAAVIGKFRTRNKEATI
CCCEEEEEHEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEE
LTRFINIETLSFQWMAQAGRQRLFKLCTIPGTNYVIRREILEKIGGWDVKALAEDTEISF
EEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEE
RVYQMGYQIKFQPRAVTWEQEPQTLDVWFHQRTRWVKGNIYVVVKNAKLLFKKAGRPIRF
EEEEECEEEEEECCEECCCCCCCEEEEEEHHCCEEEECCEEEEEECCHHHHHHCCCCEEH
DLLYFLSTYFLLMTALILSDVVFVLSVAGLAHSDLQGFSNALWLFGIIMFIISTFVTVTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
EKGEMRFSNILYIIFMYLVYSQMWLAVAAYGMVGYIREQVFHKQAKWYKTKRYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFFLMVAIIAIWGTLIINLILTVAGYTWYLQEAPKPDKQLPEKIPFVTVMVPAHNEGIV
CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHCHHHCCEEEEEEECCCCCEE
IVKTVLSLLSFDYPHDHYEIIVINDNSSDNSAELLKEVQNDFGEERLKVINTDNVTGGKG
EHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCHHHEEEEECCCCCCCCC
KSNALNIGLKQAKGSVIAIYDADNTPERGALRLLVAELLGNDRLAAVIGKFRTRNKEATI
CCCEEEEEHEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEE
LTRFINIETLSFQWMAQAGRQRLFKLCTIPGTNYVIRREILEKIGGWDVKALAEDTEISF
EEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEE
RVYQMGYQIKFQPRAVTWEQEPQTLDVWFHQRTRWVKGNIYVVVKNAKLLFKKAGRPIRF
EEEEECEEEEEECCEECCCCCCCEEEEEEHHCCEEEECCEEEEEECCHHHHHHCCCCEEH
DLLYFLSTYFLLMTALILSDVVFVLSVAGLAHSDLQGFSNALWLFGIIMFIISTFVTVTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
EKGEMRFSNILYIIFMYLVYSQMWLAVAAYGMVGYIREQVFHKQAKWYKTKRYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]