| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116492100
Identifier: 116492100
GI number: 116492100
Start: 341087
End: 342148
Strand: Direct
Name: 116492100
Synonym: PEPE_0296
Alternate gene names: NA
Gene position: 341087-342148 (Clockwise)
Preceding gene: 116492099
Following gene: 116492103
Centisome position: 18.61
GC content: 37.76
Gene sequence:
>1062_bases ATGAAATATTGTTTGAATTGTGGCGAAGAATTGCCTAAAAAAGCCAATTTTTGTCCTAATTGCGGGGTGATGCTTGAAAA TGAAGCAAAAAATGGGCCTTCAACATTAACGCGGGCAGAAATGTACAAACAACGCAGTGAAGAAGCGGAAGAAATTGAAG AAGAACCTCAAACTGAAGAAGCTGAAACCAATAGTCACTCACGTACTCAATCCCATACCGATTCTGAGTGGTGGTCGCAA ATTAAGAATTTTATTTTTTGGGTGAAACATAATCCGTTAGTTTCACTTTTACCGATTGTGATTGCTCTAGTAGTCTTAGT ATGGCTCAATAGAATTGTAGGAATTGGTTTATTAGTTCTGATTATTTTGTGTGGTTATCTTTATGCTTTAAAGGCTGGTC CAACTGATAATCAGGCGGAATTAAAGTTGCGAATGGGAATAAAGAAAGCTAAAAATGGGATTGCTAATTGGATTCAAGGT CTTAAAAACAAAAAAGATCGTAAAGAAGCTGAGGCTAGAAGTGACTCCGACATAGAAGCAGAAGACTTTGAAGTTCCCGA GGATGTTTTAGAATCAGAAACGATGGTTACTGATCCAGCGACTTCAGCTCAAGCGGAAGTGAAACCCAAACCTAAAAAGG TGGGACATCCACTTCGTAGTAAACTTTTAATCGCTGGTGCGATATTGCTAATCATTTCTACTTATATTGGACCGTTTGCT TCTGCCGTAGTAGCGGGATATAGCACTCCAACTACATTATTGAGCATCCTAAAAACTTTAGGGCAACAAAAGGTATTGCT TGCGTTACTAATAGGCCCCGTATTAATTATTTTAGGTGCGTGGTTTAGATCGCAATGGATTGTTAAAATTGGTAGTTGGG TTAATCTAATTGCTTATGGGTATACTTTCTATATTATTTATAAAAATGAGGCAGAAACGTCAGGATTTCCAGGAATGTTT AATAACGTCCATCTGGGGTGGAGTGGTTATTTAGCAGTAGGGATTACTATTTTAATATTAGCCTTTGGAAGAGGGCGTAA ACGAAGAAAAGTGGAACAATAA
Upstream 100 bases:
>100_bases ATTAAATAGCTAAAAATCTATGGTTACTTTGAAGCGGGTGGAAAAATGTTTTAAAGTAGAAAATAAAGAATTTTAACTAG ACTTAAATGAGGAATGGATA
Downstream 100 bases:
>100_bases TATTGCAGGAAGCGATTGAGCTTCCTGTTTTTTATTTGAGAGCACAAAAATAGGATTCTAGACTTCTCACACTAGAATCC CTTTATGAGGAAAGATGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MKYCLNCGEELPKKANFCPNCGVMLENEAKNGPSTLTRAEMYKQRSEEAEEIEEEPQTEEAETNSHSRTQSHTDSEWWSQ IKNFIFWVKHNPLVSLLPIVIALVVLVWLNRIVGIGLLVLIILCGYLYALKAGPTDNQAELKLRMGIKKAKNGIANWIQG LKNKKDRKEAEARSDSDIEAEDFEVPEDVLESETMVTDPATSAQAEVKPKPKKVGHPLRSKLLIAGAILLIISTYIGPFA SAVVAGYSTPTTLLSILKTLGQQKVLLALLIGPVLIILGAWFRSQWIVKIGSWVNLIAYGYTFYIIYKNEAETSGFPGMF NNVHLGWSGYLAVGITILILAFGRGRKRRKVEQ
Sequences:
>Translated_353_residues MKYCLNCGEELPKKANFCPNCGVMLENEAKNGPSTLTRAEMYKQRSEEAEEIEEEPQTEEAETNSHSRTQSHTDSEWWSQ IKNFIFWVKHNPLVSLLPIVIALVVLVWLNRIVGIGLLVLIILCGYLYALKAGPTDNQAELKLRMGIKKAKNGIANWIQG LKNKKDRKEAEARSDSDIEAEDFEVPEDVLESETMVTDPATSAQAEVKPKPKKVGHPLRSKLLIAGAILLIISTYIGPFA SAVVAGYSTPTTLLSILKTLGQQKVLLALLIGPVLIILGAWFRSQWIVKIGSWVNLIAYGYTFYIIYKNEAETSGFPGMF NNVHLGWSGYLAVGITILILAFGRGRKRRKVEQ >Mature_353_residues MKYCLNCGEELPKKANFCPNCGVMLENEAKNGPSTLTRAEMYKQRSEEAEEIEEEPQTEEAETNSHSRTQSHTDSEWWSQ IKNFIFWVKHNPLVSLLPIVIALVVLVWLNRIVGIGLLVLIILCGYLYALKAGPTDNQAELKLRMGIKKAKNGIANWIQG LKNKKDRKEAEARSDSDIEAEDFEVPEDVLESETMVTDPATSAQAEVKPKPKKVGHPLRSKLLIAGAILLIISTYIGPFA SAVVAGYSTPTTLLSILKTLGQQKVLLALLIGPVLIILGAWFRSQWIVKIGSWVNLIAYGYTFYIIYKNEAETSGFPGMF NNVHLGWSGYLAVGITILILAFGRGRKRRKVEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39332; Mature: 39332
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYCLNCGEELPKKANFCPNCGVMLENEAKNGPSTLTRAEMYKQRSEEAEEIEEEPQTEE CCHHHHCCHHCHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH AETNSHSRTQSHTDSEWWSQIKNFIFWVKHNPLVSLLPIVIALVVLVWLNRIVGIGLLVL HHCCCCHHHCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IILCGYLYALKAGPTDNQAELKLRMGIKKAKNGIANWIQGLKNKKDRKEAEARSDSDIEA HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC EDFEVPEDVLESETMVTDPATSAQAEVKPKPKKVGHPLRSKLLIAGAILLIISTYIGPFA CCCCCCHHHHCCCCEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SAVVAGYSTPTTLLSILKTLGQQKVLLALLIGPVLIILGAWFRSQWIVKIGSWVNLIAYG HHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC YTFYIIYKNEAETSGFPGMFNNVHLGWSGYLAVGITILILAFGRGRKRRKVEQ EEEEEEECCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKYCLNCGEELPKKANFCPNCGVMLENEAKNGPSTLTRAEMYKQRSEEAEEIEEEPQTEE CCHHHHCCHHCHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH AETNSHSRTQSHTDSEWWSQIKNFIFWVKHNPLVSLLPIVIALVVLVWLNRIVGIGLLVL HHCCCCHHHCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IILCGYLYALKAGPTDNQAELKLRMGIKKAKNGIANWIQGLKNKKDRKEAEARSDSDIEA HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC EDFEVPEDVLESETMVTDPATSAQAEVKPKPKKVGHPLRSKLLIAGAILLIISTYIGPFA CCCCCCHHHHCCCCEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SAVVAGYSTPTTLLSILKTLGQQKVLLALLIGPVLIILGAWFRSQWIVKIGSWVNLIAYG HHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC YTFYIIYKNEAETSGFPGMFNNVHLGWSGYLAVGITILILAFGRGRKRRKVEQ EEEEEEECCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA