| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116492041
Identifier: 116492041
GI number: 116492041
Start: 273665
End: 274303
Strand: Direct
Name: 116492041
Synonym: PEPE_0233
Alternate gene names: NA
Gene position: 273665-274303 (Clockwise)
Preceding gene: 116492040
Following gene: 116492042
Centisome position: 14.93
GC content: 41.16
Gene sequence:
>639_bases ATGACAAAAAAAGTTTTGATTTTAGGTGCTCATGGAAAAATTGCTCGTTTGGCAGAAAAGGAATTTTTGGAAAAAACGGA TGATAGTTTAAAGCTATTTTTACGCAAAGCTAGTCGTTTAAATCCAGTTCAACCTGATCGAGAAACCGTAATCGAAGGTG ACGCAACTAACTTAGAACAATTAGTCGCAGCTATGCAGGGAGTCGATGCGGTTTACGCTAATTTAGCTGGTGGCGATATT AAACAACAGGCCCAAGCGGTGGTAAAAGCGATGGATAAGGTCGGGATTAAAAGATTAGTCTGGATTTCTACCCTTGGAAT TTACGATGAGGTACCTGGTAAGTTTGGTGAATGGAATAATTCAACATTGGGGAGTTACATAACCAATTATCGGGCTGCCG CTGATGTGATTGAGGACAGTGATCTGGACTATACGATCGTTCGTCCAGCTTGGTTAACTAACAACGACGAAGTTGATTTC GAAGTTACTCAAAAGGGCGAGGTCTTCAAAGGAACTGAAGTTTCTCGGAAGAGTATCGCTCACATCGTGGTGGAACTTAT TCAAAATAATACCGAGTTGAAGCATTCCATCGGTGTTAATAAGCCCAATACAGATGGTGATAAGCCGAGCTGGTATTAA
Upstream 100 bases:
>100_bases GTGTAGCTAAAAATATTGAAAATTATTACCTAAACGTAAAAGTGTTTATAATTGCTAATTTTTTGTAAGCAAGTAAAATG AATAGTGGAGGTAGATAGTT
Downstream 100 bases:
>100_bases ACAAGAAAGTAACAAAAATGAAGATAAGTATGTGAAAAATCTTTAACCTTCTAAAAGGTGGAACTCCACATCCTTATCTT TTTTCTGTATAATCTACCGT
Product: saccharopine dehydrogenase related protein
Products: NA
Alternate protein names: NAD-Dependent Epimerase/Dehydratase; Saccharopine Dehydrogenase Related Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase; NmrA Family Protein; Saccharopine Dehydrogenase Or Related Protein; Saccharopine Dehydrogenase; NADH-Flavin Reductase
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MTKKVLILGAHGKIARLAEKEFLEKTDDSLKLFLRKASRLNPVQPDRETVIEGDATNLEQLVAAMQGVDAVYANLAGGDI KQQAQAVVKAMDKVGIKRLVWISTLGIYDEVPGKFGEWNNSTLGSYITNYRAAADVIEDSDLDYTIVRPAWLTNNDEVDF EVTQKGEVFKGTEVSRKSIAHIVVELIQNNTELKHSIGVNKPNTDGDKPSWY
Sequences:
>Translated_212_residues MTKKVLILGAHGKIARLAEKEFLEKTDDSLKLFLRKASRLNPVQPDRETVIEGDATNLEQLVAAMQGVDAVYANLAGGDI KQQAQAVVKAMDKVGIKRLVWISTLGIYDEVPGKFGEWNNSTLGSYITNYRAAADVIEDSDLDYTIVRPAWLTNNDEVDF EVTQKGEVFKGTEVSRKSIAHIVVELIQNNTELKHSIGVNKPNTDGDKPSWY >Mature_211_residues TKKVLILGAHGKIARLAEKEFLEKTDDSLKLFLRKASRLNPVQPDRETVIEGDATNLEQLVAAMQGVDAVYANLAGGDIK QQAQAVVKAMDKVGIKRLVWISTLGIYDEVPGKFGEWNNSTLGSYITNYRAAADVIEDSDLDYTIVRPAWLTNNDEVDFE VTQKGEVFKGTEVSRKSIAHIVVELIQNNTELKHSIGVNKPNTDGDKPSWY
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23519; Mature: 23388
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKVLILGAHGKIARLAEKEFLEKTDDSLKLFLRKASRLNPVQPDRETVIEGDATNLEQ CCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHH LVAAMQGVDAVYANLAGGDIKQQAQAVVKAMDKVGIKRLVWISTLGIYDEVPGKFGEWNN HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC STLGSYITNYRAAADVIEDSDLDYTIVRPAWLTNNDEVDFEVTQKGEVFKGTEVSRKSIA CHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCEEEEECCCCCEECCCHHHHHHHH HIVVELIQNNTELKHSIGVNKPNTDGDKPSWY HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TKKVLILGAHGKIARLAEKEFLEKTDDSLKLFLRKASRLNPVQPDRETVIEGDATNLEQ CCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHH LVAAMQGVDAVYANLAGGDIKQQAQAVVKAMDKVGIKRLVWISTLGIYDEVPGKFGEWNN HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC STLGSYITNYRAAADVIEDSDLDYTIVRPAWLTNNDEVDFEVTQKGEVFKGTEVSRKSIA CHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCEEEEECCCCCEECCCHHHHHHHH HIVVELIQNNTELKHSIGVNKPNTDGDKPSWY HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA