The gene/protein map for NC_008513 is currently unavailable.
Definition Buchnera aphidicola str. Cc (Cinara cedri), complete genome.
Accession NC_008513
Length 416,380

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The map label for this gene is dnaX [H]

Identifier: 116515222

GI number: 116515222

Start: 341914

End: 343020

Strand: Direct

Name: dnaX [H]

Synonym: BCc_300

Alternate gene names: 116515222

Gene position: 341914-343020 (Clockwise)

Preceding gene: 116515221

Following gene: 116515223

Centisome position: 82.12

GC content: 18.7

Gene sequence:

>1107_bases
ATGAAATATAAAATTTTATCTAATAAATGGAGACCACAAAATTTTAATCAGATTATAGGACATAAATATACTGTAAAAAT
GATAAAAAATAGTCTTAATTTTAAAAAAATTCATCAATCATGGTTACTTTCAGGAATGCATGGAGTAGGAAAAACTACTA
TAGCTAGAATTTTAGCAAAATGCTTAAATTGTAAAATTGGAATTACATCTATACCATGCAGAAAATGTAAAAATTGTTTA
TCACTTGAAAAAGGAAAATTTTTAGATTTTATAGAATTAGATGCAGCATCTAAAACTAAAGTAGATGATATTAAAATCAT
GCTTGATACTACTAAATACGCGCCTATGTGTGGTAGATTTAAAATTTATTTAATTGATGAAGTTCATATGTTATCTAAAC
ATAGTTTTAATGCTTTATTAAAAATACTAGAAGAACCACCAAAATATATTCAGATATATATAGCTACAACAAATATACAT
AAAATACCAAAAACAATAATTTCTAGATGTTTACATATAAAACTATCATATATTACACTGCATAATATATATAACTTTTT
AAAAAAAATCACAAAAAAAGAAAATATAAAAATTAAAAAAGAAGCATTAAAAATTATTTCTAATACTTCTCAAGGTAGTA
TTAGAAATGCTTTAAATACTCTTGAATTTATTAGATCCTCAGTAAAAAATAAAACAGAAATAAAAAAAAAATATATATTT
AAATTATTAGGAATACTTGATAAAAAAAATGTTCTAAAACTAGCTATAGAAATAATTAATAATGATTTTAATAAAATATT
TAATATATTAAATAATGCAGAAAAAATTGGTATACAATATTCTAATATAGTATCATCTTTAATTATATTTTTTCATAAAA
TTTCTTTAATAAAAATTAATCAAAAAAAAAAAAAAAAATATAATAAAATATCCAAATATAAACAAAAAGTTTATATATTA
TCTAAAAAAATTTCCTTTAAAGATTTACAATTTTATTGTAAAATTCTTCTTCAAGGAAAACATTATTTAAATAATTCACC
AAGTCCTAAAATTGGATTTGAAATAATGTTATTTCAAATATTTCAGTATATAAAAGAAAAAAAATAA

Upstream 100 bases:

>100_bases
TAAATATGTAGAAAATTTCTATCTATATACTTATAATAAATATTATATAGGAATAAATAAAATTAATCAATAAAAACATT
ATTACTTTAAAGTGAAAAAA

Downstream 100 bases:

>100_bases
TTATTTTATATAATTAATAAAATAATTAATGAAACTAATAAAAAAATACAGATATCTCTATAAGTAAAATAATTTAAAAT
AAATTTAAAATTGGATAAAT

Product: DNA polymerase III, g and t subunits

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITSIPCRKCKNCL
SLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIH
KIPKTIISRCLHIKLSYITLHNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF
KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKINQKKKKKYNKISKYKQKVYIL
SKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQIFQYIKEKK

Sequences:

>Translated_368_residues
MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITSIPCRKCKNCL
SLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIH
KIPKTIISRCLHIKLSYITLHNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF
KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKINQKKKKKYNKISKYKQKVYIL
SKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQIFQYIKEKK
>Mature_368_residues
MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITSIPCRKCKNCL
SLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIH
KIPKTIISRCLHIKLSYITLHNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF
KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKINQKKKKKYNKISKYKQKVYIL
SKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQIFQYIKEKK

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG2812

COG function: function code L; DNA polymerase III, gamma/tau subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI194306571, Length=294, Percent_Identity=22.108843537415, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI194306567, Length=294, Percent_Identity=22.108843537415, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI6677723, Length=292, Percent_Identity=22.2602739726027, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI31563534, Length=297, Percent_Identity=23.9057239057239, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786676, Length=363, Percent_Identity=37.1900826446281, Blast_Score=316, Evalue=1e-87,
Organism=Caenorhabditis elegans, GI17541988, Length=307, Percent_Identity=24.4299674267101, Blast_Score=71, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322528, Length=288, Percent_Identity=21.5277777777778, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17647857, Length=289, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR008921
- InterPro:   IPR022754
- InterPro:   IPR012763 [H]

Pfam domain/function: PF00004 AAA; PF12169 DNA_pol3_gamma3 [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 43004; Mature: 43004

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK
CCEEECCCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF
HHCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCE
KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL
EEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHEEEC
QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHH
FQYIKEKK
HHHHHCCC
>Mature Secondary Structure
MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK
CCEEECCCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF
HHCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCE
KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL
EEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHEEEC
QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHH
FQYIKEKK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]