Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is dnaX [H]
Identifier: 116515222
GI number: 116515222
Start: 341914
End: 343020
Strand: Direct
Name: dnaX [H]
Synonym: BCc_300
Alternate gene names: 116515222
Gene position: 341914-343020 (Clockwise)
Preceding gene: 116515221
Following gene: 116515223
Centisome position: 82.12
GC content: 18.7
Gene sequence:
>1107_bases ATGAAATATAAAATTTTATCTAATAAATGGAGACCACAAAATTTTAATCAGATTATAGGACATAAATATACTGTAAAAAT GATAAAAAATAGTCTTAATTTTAAAAAAATTCATCAATCATGGTTACTTTCAGGAATGCATGGAGTAGGAAAAACTACTA TAGCTAGAATTTTAGCAAAATGCTTAAATTGTAAAATTGGAATTACATCTATACCATGCAGAAAATGTAAAAATTGTTTA TCACTTGAAAAAGGAAAATTTTTAGATTTTATAGAATTAGATGCAGCATCTAAAACTAAAGTAGATGATATTAAAATCAT GCTTGATACTACTAAATACGCGCCTATGTGTGGTAGATTTAAAATTTATTTAATTGATGAAGTTCATATGTTATCTAAAC ATAGTTTTAATGCTTTATTAAAAATACTAGAAGAACCACCAAAATATATTCAGATATATATAGCTACAACAAATATACAT AAAATACCAAAAACAATAATTTCTAGATGTTTACATATAAAACTATCATATATTACACTGCATAATATATATAACTTTTT AAAAAAAATCACAAAAAAAGAAAATATAAAAATTAAAAAAGAAGCATTAAAAATTATTTCTAATACTTCTCAAGGTAGTA TTAGAAATGCTTTAAATACTCTTGAATTTATTAGATCCTCAGTAAAAAATAAAACAGAAATAAAAAAAAAATATATATTT AAATTATTAGGAATACTTGATAAAAAAAATGTTCTAAAACTAGCTATAGAAATAATTAATAATGATTTTAATAAAATATT TAATATATTAAATAATGCAGAAAAAATTGGTATACAATATTCTAATATAGTATCATCTTTAATTATATTTTTTCATAAAA TTTCTTTAATAAAAATTAATCAAAAAAAAAAAAAAAAATATAATAAAATATCCAAATATAAACAAAAAGTTTATATATTA TCTAAAAAAATTTCCTTTAAAGATTTACAATTTTATTGTAAAATTCTTCTTCAAGGAAAACATTATTTAAATAATTCACC AAGTCCTAAAATTGGATTTGAAATAATGTTATTTCAAATATTTCAGTATATAAAAGAAAAAAAATAA
Upstream 100 bases:
>100_bases TAAATATGTAGAAAATTTCTATCTATATACTTATAATAAATATTATATAGGAATAAATAAAATTAATCAATAAAAACATT ATTACTTTAAAGTGAAAAAA
Downstream 100 bases:
>100_bases TTATTTTATATAATTAATAAAATAATTAATGAAACTAATAAAAAAATACAGATATCTCTATAAGTAAAATAATTTAAAAT AAATTTAAAATTGGATAAAT
Product: DNA polymerase III, g and t subunits
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITSIPCRKCKNCL SLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIH KIPKTIISRCLHIKLSYITLHNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKINQKKKKKYNKISKYKQKVYIL SKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQIFQYIKEKK
Sequences:
>Translated_368_residues MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITSIPCRKCKNCL SLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIH KIPKTIISRCLHIKLSYITLHNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKINQKKKKKYNKISKYKQKVYIL SKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQIFQYIKEKK >Mature_368_residues MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITSIPCRKCKNCL SLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIH KIPKTIISRCLHIKLSYITLHNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKINQKKKKKYNKISKYKQKVYIL SKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQIFQYIKEKK
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]
COG id: COG2812
COG function: function code L; DNA polymerase III, gamma/tau subunits
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI194306571, Length=294, Percent_Identity=22.108843537415, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI194306567, Length=294, Percent_Identity=22.108843537415, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI6677723, Length=292, Percent_Identity=22.2602739726027, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI31563534, Length=297, Percent_Identity=23.9057239057239, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1786676, Length=363, Percent_Identity=37.1900826446281, Blast_Score=316, Evalue=1e-87, Organism=Caenorhabditis elegans, GI17541988, Length=307, Percent_Identity=24.4299674267101, Blast_Score=71, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6322528, Length=288, Percent_Identity=21.5277777777778, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI17647857, Length=289, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008921 - InterPro: IPR022754 - InterPro: IPR012763 [H]
Pfam domain/function: PF00004 AAA; PF12169 DNA_pol3_gamma3 [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 43004; Mature: 43004
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK CCEEECCCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF HHCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCE KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL EEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHEEEC QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHH FQYIKEKK HHHHHCCC >Mature Secondary Structure MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK CCEEECCCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF HHCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCE KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL EEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHEEEC QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHH FQYIKEKK HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12089438 [H]