Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is clpP [H]
Identifier: 116515217
GI number: 116515217
Start: 331724
End: 332326
Strand: Direct
Name: clpP [H]
Synonym: BCc_293
Alternate gene names: 116515217
Gene position: 331724-332326 (Clockwise)
Preceding gene: 116515216
Following gene: 116515218
Centisome position: 79.67
GC content: 23.22
Gene sequence:
>603_bases ATGAATAATATTAAAAAAAAAAATCAACAAAAAAACAATTTACTTATACCATTTGTAATTGAAAAAACAAATCATGGAGA AAGATCATATGATATATTTTCTAAATTATTAAAAGAAAGAATAATTTTTATTACTGGGATAATCGATGATAATATCGCTA GTATTGTTATATCTCAAATATTATTTCTAGAATCAGAAAATAAAAAAAAAGATATTTTTATATACATAAATTCTCCTGGA GGTATTATAACATCAGGATTATCAATTTATGATACTATGCAATTTGTTCAACCTAAAATTAATACAATATGTATTGGACA AGCGGTCTATGCAGCTATATTATTATGTTCAGGAAACAAAGGAAAAAGATTTAGTTTACCTCATGCTAGAATTATGTTAC ATCAACCATTAGGTGGTTTTAAAGGACAAGCATCAGATATTATGATACACGCTCAAGAAATAAAAAAAATAAAAAAAATA ATAAATAACTTATTATCTTATCATACCAAACAACCAATCAAAAAAATAAAAAAAGATACAGAACGTGATTACTTTTTTTC AGCACAAGAAGCTATTAAGTATGGTTTAATTGATTCTTTTTAA
Upstream 100 bases:
>100_bases TAAAAATATTTAAAATATATAAAATTTTATATAAAAAGTAATATAAATAAAAAAAATTTATATTAATTTAATATAAACAT TTTTTAAAGAGAAATTAAAT
Downstream 100 bases:
>100_bases AAAAAAGAAATATTTATAAATAAAAATGTTTTAAATAATCATAGAGAAAAAAATGGATAATACAATTGATAATCAAGATA TTATATTATGTTCTTTTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: Endopeptidase Clp [H]
Number of amino acids: Translated: 200; Mature: 200
Protein sequence:
>200_residues MNNIKKKNQQKNNLLIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQILFLESENKKKDIFIYINSPG GIITSGLSIYDTMQFVQPKINTICIGQAVYAAILLCSGNKGKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKI INNLLSYHTKQPIKKIKKDTERDYFFSAQEAIKYGLIDSF
Sequences:
>Translated_200_residues MNNIKKKNQQKNNLLIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQILFLESENKKKDIFIYINSPG GIITSGLSIYDTMQFVQPKINTICIGQAVYAAILLCSGNKGKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKI INNLLSYHTKQPIKKIKKDTERDYFFSAQEAIKYGLIDSF >Mature_200_residues MNNIKKKNQQKNNLLIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQILFLESENKKKDIFIYINSPG GIITSGLSIYDTMQFVQPKINTICIGQAVYAAILLCSGNKGKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKI INNLLSYHTKQPIKKIKKDTERDYFFSAQEAIKYGLIDSF
Specific function: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins [H]
COG id: COG0740
COG function: function code OU; Protease subunit of ATP-dependent Clp proteases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S14 family [H]
Homologues:
Organism=Homo sapiens, GI5174419, Length=185, Percent_Identity=53.5135135135135, Blast_Score=220, Evalue=8e-58, Organism=Escherichia coli, GI1786641, Length=196, Percent_Identity=57.1428571428571, Blast_Score=262, Evalue=1e-71, Organism=Caenorhabditis elegans, GI17538017, Length=184, Percent_Identity=50.5434782608696, Blast_Score=203, Evalue=4e-53, Organism=Drosophila melanogaster, GI20129427, Length=194, Percent_Identity=53.6082474226804, Blast_Score=224, Evalue=4e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001907 - InterPro: IPR018215 [H]
Pfam domain/function: PF00574 CLP_protease [H]
EC number: =3.4.21.92 [H]
Molecular weight: Translated: 22790; Mature: 22790
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: PS00382 CLP_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNIKKKNQQKNNLLIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQI CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHH LFLESENKKKDIFIYINSPGGIITSGLSIYDTMQFVQPKINTICIGQAVYAAILLCSGNK HHHCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHEECCCC GKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKIINNLLSYHTKQPIKKIKKDT CCEECCCHHEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC ERDYFFSAQEAIKYGLIDSF CHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNNIKKKNQQKNNLLIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQI CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHH LFLESENKKKDIFIYINSPGGIITSGLSIYDTMQFVQPKINTICIGQAVYAAILLCSGNK HHHCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHEECCCC GKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKIINNLLSYHTKQPIKKIKKDT CCEECCCHHEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC ERDYFFSAQEAIKYGLIDSF CHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12522265 [H]