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The map label for this gene is clpX [H]

Identifier: 116515218

GI number: 116515218

Start: 332379

End: 333641

Strand: Direct

Name: clpX [H]

Synonym: BCc_294

Alternate gene names: 116515218

Gene position: 332379-333641 (Clockwise)

Preceding gene: 116515217

Following gene: 116515219

Centisome position: 79.83

GC content: 21.54

Gene sequence:

>1263_bases
ATGGATAATACAATTGATAATCAAGATATTATATTATGTTCTTTTTGCAAAAAAAATCAAAAAAAAACAAAAAAAATGAT
TACCGGTCTATCAGGACATATTTGTGACCAATGTATTTTACTGTGTTATGATATTCTAAATAAAAATAAATTTCAAAAAA
ACAAAAAAAAAATTAAATTATATACACCAAAAATTATAAAAGAATATTTAGACAAATTTATTATAGGTCAAAAAAAAGCA
AAAAAAATAATTTCAGTAGCTGTATATAATCATTATAAAAAAATTAATTATTTATTAAAAAAAAATCGTTCCCTAGAATT
GGGAAAAAGTAATATTTTAATTATAGGACCTACTGGAACTGGAAAAACTTTAATAGCTGAAACATTAGCAAAATATTTAA
AAGTACCATTCGCTATAGCAGATGCTACTACTCTTACAGAAGCAGGATATGTAGGAGAAGATGTTGAAAATATTTTAAGA
AAATTAATAGAAAACAGTAATTTTGATATAAATAAAGCAGAAAAAGGTATTATATATATTGATGAAATTGATAAAATTAC
AAAAAAATCAGAAAATCTTTCAATTACTCGTGATGTTTCAGGAGAAGGTGTACAACAATCATTACTTAAAATAATAGAAG
GAACTATTGCATCAGTTCCAATAAAAGGAACAAGGAAACATCCACAACAAGAAACATGGAAAATAAATACCTCAAAAATT
TTATTTATTTGCGGCGGATCTTTTTTTGGATTAACAAAAATTTTATCTAATCGTTTAAATAAAACATCTAATATTGGATT
TAACAAAAAAATTAAAAAAATAAAAAAAAACAAAAAAAAAAACAATTATTTAAATAAAATACAACCACAAGATTTAATAA
AATTTGGTTTAATTCCAGAATTTATTAGCAGATTACCAATTATTGTTACATTAAAAAGTCTAAAAAAAAGTGATCTAATT
AAAATACTCTGTAAACCGAAAAATGCTCTTATAAAACAATATAAAAAGTTGTTTTCTTTAGAAAAAGTAAAATTAAAATT
TGATAATACAGCTCTAAAAGAAATTGCAAAATATGCTATTAAAAAAAAAACAGGGGCAAGAGGATTACGATCAATATTAG
AATCAGTTTTATTAAACACCATGTATAAAATACCTACATTTAAAAACATAAAAAGTATACATATTGATTCTTCTGTTATA
AAAGGAATTCATCCGCCAAAATTATTTTTTTTAAAAAAAAAAACAAAAAAAAATAATATATAA

Upstream 100 bases:

>100_bases
TTTTCAGCACAAGAAGCTATTAAGTATGGTTTAATTGATTCTTTTTAAAAAAAAGAAATATTTATAAATAAAAATGTTTT
AAATAATCATAGAGAAAAAA

Downstream 100 bases:

>100_bases
ATTTTATATTATATCAATGTATAAAAATATTTTTATAAAGTTAAAATAACATCTATAAAACTATAAAAAGTTTTATATAT
ATTTAAAATTCTAATAGAGA

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MDNTIDNQDIILCSFCKKNQKKTKKMITGLSGHICDQCILLCYDILNKNKFQKNKKKIKLYTPKIIKEYLDKFIIGQKKA
KKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGTGKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILR
KLIENSNFDINKAEKGIIYIDEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKINTSKI
LFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKFGLIPEFISRLPIIVTLKSLKKSDLI
KILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEIAKYAIKKKTGARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVI
KGIHPPKLFFLKKKTKKNNI

Sequences:

>Translated_420_residues
MDNTIDNQDIILCSFCKKNQKKTKKMITGLSGHICDQCILLCYDILNKNKFQKNKKKIKLYTPKIIKEYLDKFIIGQKKA
KKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGTGKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILR
KLIENSNFDINKAEKGIIYIDEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKINTSKI
LFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKFGLIPEFISRLPIIVTLKSLKKSDLI
KILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEIAKYAIKKKTGARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVI
KGIHPPKLFFLKKKTKKNNI
>Mature_420_residues
MDNTIDNQDIILCSFCKKNQKKTKKMITGLSGHICDQCILLCYDILNKNKFQKNKKKIKLYTPKIIKEYLDKFIIGQKKA
KKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGTGKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILR
KLIENSNFDINKAEKGIIYIDEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKINTSKI
LFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKFGLIPEFISRLPIIVTLKSLKKSDLI
KILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEIAKYAIKKKTGARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVI
KGIHPPKLFFLKKKTKKNNI

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=335, Percent_Identity=44.4776119402985, Blast_Score=291, Evalue=1e-78,
Organism=Escherichia coli, GI1786642, Length=412, Percent_Identity=54.6116504854369, Blast_Score=485, Evalue=1e-138,
Organism=Escherichia coli, GI1790366, Length=136, Percent_Identity=38.2352941176471, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71982908, Length=323, Percent_Identity=40.8668730650155, Blast_Score=268, Evalue=4e-72,
Organism=Caenorhabditis elegans, GI71982905, Length=323, Percent_Identity=40.8668730650155, Blast_Score=266, Evalue=1e-71,
Organism=Caenorhabditis elegans, GI71988663, Length=410, Percent_Identity=35.609756097561, Blast_Score=244, Evalue=8e-65,
Organism=Caenorhabditis elegans, GI71988660, Length=260, Percent_Identity=36.5384615384615, Blast_Score=164, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6319704, Length=426, Percent_Identity=39.6713615023474, Blast_Score=284, Evalue=2e-77,
Organism=Drosophila melanogaster, GI24648289, Length=323, Percent_Identity=42.7244582043344, Blast_Score=293, Evalue=2e-79,
Organism=Drosophila melanogaster, GI24648291, Length=323, Percent_Identity=42.7244582043344, Blast_Score=292, Evalue=3e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 47804; Mature: 47804

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNTIDNQDIILCSFCKKNQKKTKKMITGLSGHICDQCILLCYDILNKNKFQKNKKKIKL
CCCCCCCCCEEEEHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCEEEE
YTPKIIKEYLDKFIIGQKKAKKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGT
ECHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCC
GKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILRKLIENSNFDINKAEKGIIYI
CHHHHHHHHHHHHHCCHHEECHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE
DEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKINTSKI
ECHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEE
LFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKFGLIPE
EEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHH
FISRLPIIVTLKSLKKSDLIKILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEIAKYAI
HHHHCCCEEEHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHH
KKKTGARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVIKGIHPPKLFFLKKKTKKNNI
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MDNTIDNQDIILCSFCKKNQKKTKKMITGLSGHICDQCILLCYDILNKNKFQKNKKKIKL
CCCCCCCCCEEEEHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCEEEE
YTPKIIKEYLDKFIIGQKKAKKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGT
ECHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCC
GKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILRKLIENSNFDINKAEKGIIYI
CHHHHHHHHHHHHHCCHHEECHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE
DEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKINTSKI
ECHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEE
LFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKFGLIPE
EEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHH
FISRLPIIVTLKSLKKSDLIKILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEIAKYAI
HHHHCCCEEEHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHH
KKKTGARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVIKGIHPPKLFFLKKKTKKNNI
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA