Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is recD [H]
Identifier: 116515209
GI number: 116515209
Start: 323110
End: 324891
Strand: Direct
Name: recD [H]
Synonym: BCc_283
Alternate gene names: 116515209
Gene position: 323110-324891 (Clockwise)
Preceding gene: 116515208
Following gene: 116515210
Centisome position: 77.6
GC content: 15.38
Gene sequence:
>1782_bases ATGTTATCTAAAAATATAAAAAAATTTTTTAAAATAATAAAAATTGCAAAAAAGAAAAAAGAAATAAATTGTATAGATTA TTACACATGTATTAATAAAAAAATTTCAAATTATTCACCTGAAGTTATATTAGTAATTCTTTACTTAATATATTCAGCTC GACATGGACATAGTTGTATACCAAAAAAACATTTTGTTAAAAAAAAAATAAAAAGAAAAAATGTGTTTATAAAATTATTA AATATTGTTAGTAAAAATAATATTAATTGGTTTAATACTGTAATAAGTAGCATGTTATGTAGTAACGGCACACAAAAAAC ACCTCTTGTAATTGACAAAAAATATATTTATTTATATAAATATTGGTATTCAGAAAATAAAATAATTGAATTGCTTTATC AAAAAAAAAGTAAAAAAAAAAAAAATAAAATAGAATATAAAAAATTAATAAAAAAATATTGTTCAAATTATATTGATAAA AATCAAAAAAATGCAGTTAAAAAAGCTTTAATTCATAATTTGTTTTTTCTTCTTGGTGGTCCAGGCACAGGAAAAACAAA TATAATAGCTTATTTAATTTTAATTTTAATTAAAATATCAAAAAAAAAAATAAAAATTCAATTGACAGCTCCTACAGGAA AAGCGGTAAACAAACTAACTCAATCTATATATAAAATATTAAAAAAAAAAAACATTCAAAAAAATGAAAAAAAAATGATA CCTAAAGAAGGAATTACATTACATAAATTATTTAAAATTCAAAAAGAAACTAATAAAAATAATGCGAAATATATAAAAAG AAAAAAAAAAATTGATATTCTTATCATTGATGAATCATCTATGATTAGTTTAAATATAATGGAAATAATATTAACATGTA TAAAAAAAAAAACAAAAATAATTTTTGTTGGAGATGTATATCAATTACCTTCTGTAGAAACTGGATCAATTTTAAAAAAA ATATGTAATTTTAAAAAAAAAAAAAAAGAAAAAAAAAAAATTTTTTTTGTATTAAAAAAAAATTATAGATTTAATAAAAA TTCAGGAATTAATTTCTTAATTAATCAATTAAAAAAAAAAAAAATCAAAGATATTAATAAGATTTATAAAAAAAAATATA AAGATATAATATGGAAAAATTTAAATACATCAAATGATTATTTAAATATGCTTAAAAAAATAAAATTATATTATAAAAAA TATTGGAATTATGTAAATAAAAAAAAAAATCCAAAAAAAATTATTCATAAATTTAATAAATATCGTATATTATGTATAAT AAATAAAGGTATATTTGGAACTAAAAAAATAAATCAATATTTAGATAATTATTTTATAAAAATAAATAATAAAAAAAAAA AAAAAGAATTTTGGTATCACGGAAAACCTATTATAATTAAAAAAAATAATATATTTTTAAAATTAATGAATGGAGATATA GGAATTTGTTTATATAAAAAAAAAAAGAAAAAAATTTATTTTTTATTATCTACTGGAAAAATAAAAAAATTTAATCCAGA AATTTTATTTCATTATAAAACTGCTTGGTCAACTACCATTCATAAATCTCAAGGATCAGAATTTTTATCTGTAAATATTA TTATTCCAAATTATTTCTCTAATAAATTTTCTAAAGAATTATTTTATACTGCTATTAGTAGAGCTCAAAAAAAAGTTACA ATTTATGCAAATAAAAAAATTTTAAATAAAATTATTAATAATAATAAAGAAAGGTATTCTGGTTTAAAAAAAAAAATAGA AGAATTAAATATTTTTTCTTAA
Upstream 100 bases:
>100_bases CTTAGAGCATTTGATAATAAAAATAACACTGGAACATATTTTATTAAACCTTCATATTTATTAATTAAAAATTTAGAAAA TCTTATATATGGAAATTAAA
Downstream 100 bases:
>100_bases TAAAATTATGGTTGCGGGGATTGGATTTGAACCAACGACCTTCGGGTTATGAGCCCGACGAGCTACCTGACTGCTCCACC CCGCTATCAATTTAATTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLL NIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDK NQKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKK YWNYVNKKKNPKKIIHKFNKYRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYTAISRAQKKVT IYANKKILNKIINNNKERYSGLKKKIEELNIFS
Sequences:
>Translated_593_residues MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLL NIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDK NQKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKK YWNYVNKKKNPKKIIHKFNKYRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYTAISRAQKKVT IYANKKILNKIINNNKERYSGLKKKIEELNIFS >Mature_593_residues MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLL NIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDK NQKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKK YWNYVNKKKNPKKIIHKFNKYRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYTAISRAQKKVT IYANKKILNKIINNNKERYSGLKKKIEELNIFS
Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recD family [H]
Homologues:
Organism=Escherichia coli, GI1789182, Length=579, Percent_Identity=29.0155440414508, Blast_Score=313, Evalue=2e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007807 - InterPro: IPR006344 - InterPro: IPR000606 [H]
Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]
EC number: =3.1.11.5 [H]
Molecular weight: Translated: 70498; Mature: 70498
Theoretical pI: Translated: 10.87; Mature: 10.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCI CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC PKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYK CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEE YWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDKNQKNAVKKALIHNLFFLLGG EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC PGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKI CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCEEEHHHHHHHHHHHCCCCEE IFVGDVYQLPSVETGSILKKICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKK EEEECCEECCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHH KIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC YRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI EEEEEEEECCCCCHHHHHHHHCCEEEEECCCCHHHHHEECCCEEEEECCCEEEEEECCCE GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFS EEEEEEECCCEEEEEEECCCCEECCCCEEEEEECHHHHEEECCCCCCEEEEEEEECCHHH NKFSKELFYTAISRAQKKVTIYANKKILNKIINNNKERYSGLKKKIEELNIFS HHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCI CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC PKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYK CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEE YWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDKNQKNAVKKALIHNLFFLLGG EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC PGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKI CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCEEEHHHHHHHHHHHCCCCEE IFVGDVYQLPSVETGSILKKICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKK EEEECCEECCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHH KIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC YRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI EEEEEEEECCCCCHHHHHHHHCCEEEEECCCCHHHHHEECCCEEEEECCCEEEEEECCCE GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFS EEEEEEECCCEEEEEEECCCCEECCCCEEEEEECHHHHEEECCCCCCEEEEEEEECCHHH NKFSKELFYTAISRAQKKVTIYANKKILNKIINNNKERYSGLKKKIEELNIFS HHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3537961; 9278503; 3537960 [H]