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The map label for this gene is nusB

Identifier: 116515210

GI number: 116515210

Start: 325171

End: 325599

Strand: Direct

Name: nusB

Synonym: BCc_285

Alternate gene names: 116515210

Gene position: 325171-325599 (Clockwise)

Preceding gene: 116515209

Following gene: 116515216

Centisome position: 78.09

GC content: 17.72

Gene sequence:

>429_bases
ATGAAATCAAAAAGAAGAAAAGCTAGAGAGTTAGCAATACAAGTGTTATACTCTTGGCAAATATCAAAAAAAATTGTACT
ATTTGAAACTGAAAAATATGTTATAGAACAAAACAAAAAATATTCTTTAGATAAAATTTATTTTCATAAAATAGTTACTG
GAGTCATAAAAAATATATTTTATATCGATAAAATAATTAAAAAAAATATATCAAAAAAAAAAAATAGATTAGATTATATA
GAACAAGCAATACTTCGATTGGCATCCTATGAAATTATTAAAAGATTAGATATTCCATATAAAGTAATTATTAATGAAGG
AATAGAATTAGCTAAAATATATGGATCAAATAAAAGTCATAAATTTATAAATAGTATATTAGATAAAATAATTACTAATA
AAAATAATATCAAAATAAAAAATTTTTAA

Upstream 100 bases:

>100_bases
TATAGAATATAAAATAAAATTTGTTTATACTATTAAAATAAATCATAATATATATATTATAAAAAATATTTTATATATAA
AATAGAAAGGTATTTCTACC

Downstream 100 bases:

>100_bases
AAAATATCAAAAAATTTTTAACAATATGTATTTCTTATAATAAAAATGAACATAATTAAAAAAAAAAAATGGAACATAAA
AATTGCAGAAAAATTGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIFYIDKIIKKNISKKKNRLDYI
EQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSHKFINSILDKIITNKNNIKIKNF

Sequences:

>Translated_142_residues
MKSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIFYIDKIIKKNISKKKNRLDYI
EQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSHKFINSILDKIITNKNNIKIKNF
>Mature_142_residues
MKSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIFYIDKIIKKNISKKKNRLDYI
EQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSHKFINSILDKIITNKNNIKIKNF

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=45, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BUCCC (Q057F3)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802839.1
- ProteinModelPortal:   Q057F3
- SMR:   Q057F3
- STRING:   Q057F3
- EnsemblBacteria:   EBBUCT00000001394
- GeneID:   4440947
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_285
- eggNOG:   COG0781
- GeneTree:   EBGT00050000008099
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- BioCyc:   BAPH372461:BCC_285-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16952; Mature: 16952

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIF
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHCCCCCH
KFINSILDKIITNKNNIKIKNF
HHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MKSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIF
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHCCCCCH
KFINSILDKIITNKNNIKIKNF
HHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA