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The map label for this gene is yggB [C]

Identifier: 116515206

GI number: 116515206

Start: 315463

End: 316371

Strand: Direct

Name: yggB [C]

Synonym: BCc_280

Alternate gene names: 116515206

Gene position: 315463-316371 (Clockwise)

Preceding gene: 116515205

Following gene: 116515207

Centisome position: 75.76

GC content: 22.55

Gene sequence:

>909_bases
ATGCAAAAAAAAATTTTTATTATAAAAAAAATAATTGATCAATTAAATATTAATAATTATATTAATAATGTTAATTTTTG
TTTTTTAATAAACAAAAGTTCTTTTTATTCTTATTTAATTAATCTATCTTGTTCTTTCATCGTAATAATTACTGGTTTTT
GTATAAGTCAAATTTTTGCTAAAGGAACTCAAAAATTATTATCTATACGTCATATTGACAATACAGTTTCTGGATTTTTA
GCTACTTTAGCTCGCTACATAATACTTGCATGTACATGTGTTATTGCATTAGGACAAATAGGTGTGCAAACAAGTTCAAT
TATTGCAATTGTAGGAGCTGCTGGAATGGCAATAGGATTAGCTTTACAAGCATCATTATCAAATTTTGCAGCAGGAGTAT
TATTAGTATTATTAAGACCATTAAGAACTAATGAATATGTAAATTTAGGAAATGCAGAAGGAACTGTTATAAATGTTCAT
ATATTTTATACTACTCTAAAAACTTTAGATGGAAAAATAATAATTATTCCTAATGGAAAAATAGTTTCTGGAAATATTAT
TAATTATTCTAGAGAACCTATGAGAAGAAATCAATTTGTTATTAATGTTGCATATGATTCTGATGTAGATTTAGTAATTT
CAGTATTACAATCAGTTATTGATCAAGAAGAACGTGTATTAAAACATCCAGGAAATTTTGTTGGATTAAATGAATTTTCT
CCTTCATCATTAAAATTTGTTGTAAAATGTTGGTGTCATACAAAAGAATTAAATTCAGTATATTCTGATTTAATGTTAAA
ATTTAAAAAAGCATTAGATAAACATAATATAACTATACCATATCCTAAAATGGATGTTTATTTATATAAAAAAATACATA
AAATATTAAAAATAAATAAAAAAAAATAA

Upstream 100 bases:

>100_bases
TTTAAATTTGTTTTTTTATAAATAAATAAAAATTTAATTTAATTAATAAATATTTTTATAATTTATAAAAATATTTATTA
AAATTAAAAATTAAAAAAAA

Downstream 100 bases:

>100_bases
AAAAGAAAGAAAAAATTAATACTTACTTAATCTATAATATAGAATTTTCTAATTTTTATATTATAGATTTTTAATATAAA
AACATACATATGTTAAAAAT

Product: YggB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQKKIFIIKKIIDQLNINNYINNVNFCFLINKSSFYSYLINLSCSFIVIITGFCISQIFAKGTQKLLSIRHIDNTVSGFL
ATLARYIILACTCVIALGQIGVQTSSIIAIVGAAGMAIGLALQASLSNFAAGVLLVLLRPLRTNEYVNLGNAEGTVINVH
IFYTTLKTLDGKIIIIPNGKIVSGNIINYSREPMRRNQFVINVAYDSDVDLVISVLQSVIDQEERVLKHPGNFVGLNEFS
PSSLKFVVKCWCHTKELNSVYSDLMLKFKKALDKHNITIPYPKMDVYLYKKIHKILKINKKK

Sequences:

>Translated_302_residues
MQKKIFIIKKIIDQLNINNYINNVNFCFLINKSSFYSYLINLSCSFIVIITGFCISQIFAKGTQKLLSIRHIDNTVSGFL
ATLARYIILACTCVIALGQIGVQTSSIIAIVGAAGMAIGLALQASLSNFAAGVLLVLLRPLRTNEYVNLGNAEGTVINVH
IFYTTLKTLDGKIIIIPNGKIVSGNIINYSREPMRRNQFVINVAYDSDVDLVISVLQSVIDQEERVLKHPGNFVGLNEFS
PSSLKFVVKCWCHTKELNSVYSDLMLKFKKALDKHNITIPYPKMDVYLYKKIHKILKINKKK
>Mature_302_residues
MQKKIFIIKKIIDQLNINNYINNVNFCFLINKSSFYSYLINLSCSFIVIITGFCISQIFAKGTQKLLSIRHIDNTVSGFL
ATLARYIILACTCVIALGQIGVQTSSIIAIVGAAGMAIGLALQASLSNFAAGVLLVLLRPLRTNEYVNLGNAEGTVINVH
IFYTTLKTLDGKIIIIPNGKIVSGNIINYSREPMRRNQFVINVAYDSDVDLVISVLQSVIDQEERVLKHPGNFVGLNEFS
PSSLKFVVKCWCHTKELNSVYSDLMLKFKKALDKHNITIPYPKMDVYLYKKIHKILKINKKK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=283, Percent_Identity=48.4098939929329, Blast_Score=297, Evalue=4e-82,
Organism=Escherichia coli, GI1786670, Length=228, Percent_Identity=26.3157894736842, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI2367355, Length=259, Percent_Identity=23.5521235521236, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787591, Length=223, Percent_Identity=23.3183856502242, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014
- InterPro:   IPR008910 [H]

Pfam domain/function: PF00924 MS_channel; PF05552 TM_helix [H]

EC number: NA

Molecular weight: Translated: 33828; Mature: 33828

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKIFIIKKIIDQLNINNYINNVNFCFLINKSSFYSYLINLSCSFIVIITGFCISQIFA
CCCHHHHHHHHHHHHCHHHHHCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KGTQKLLSIRHIDNTVSGFLATLARYIILACTCVIALGQIGVQTSSIIAIVGAAGMAIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ALQASLSNFAAGVLLVLLRPLRTNEYVNLGNAEGTVINVHIFYTTLKTLDGKIIIIPNGK
HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEEEEEHHHCCCEEEEEECCE
IVSGNIINYSREPMRRNQFVINVAYDSDVDLVISVLQSVIDQEERVLKHPGNFVGLNEFS
EEECCEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
PSSLKFVVKCWCHTKELNSVYSDLMLKFKKALDKHNITIPYPKMDVYLYKKIHKILKINK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
KK
CC
>Mature Secondary Structure
MQKKIFIIKKIIDQLNINNYINNVNFCFLINKSSFYSYLINLSCSFIVIITGFCISQIFA
CCCHHHHHHHHHHHHCHHHHHCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KGTQKLLSIRHIDNTVSGFLATLARYIILACTCVIALGQIGVQTSSIIAIVGAAGMAIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ALQASLSNFAAGVLLVLLRPLRTNEYVNLGNAEGTVINVHIFYTTLKTLDGKIIIIPNGK
HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEEEEEHHHCCCEEEEEECCE
IVSGNIINYSREPMRRNQFVINVAYDSDVDLVISVLQSVIDQEERVLKHPGNFVGLNEFS
EEECCEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
PSSLKFVVKCWCHTKELNSVYSDLMLKFKKALDKHNITIPYPKMDVYLYKKIHKILKINK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
KK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]