Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is pgk [H]
Identifier: 116515204
GI number: 116515204
Start: 312981
End: 314132
Strand: Direct
Name: pgk [H]
Synonym: BCc_278
Alternate gene names: 116515204
Gene position: 312981-314132 (Clockwise)
Preceding gene: 116515202
Following gene: 116515205
Centisome position: 75.17
GC content: 22.74
Gene sequence:
>1152_bases ATGTACATGAAAAATATTAATTTAAAAAATAAAAGAGTATTTATTCGATTAGATTTAAATGTTCCTATATATAAAAAAAA AATTATTTCTACTGAACGCATAGATCGATCTATTCCGACTATATTATTAGCATTAAAAAAGAATGCTAAAATAATCTTAG CTTCTCATTTAGGAAGACCTAAAGAAGGAATATATAATAAAAATTTTTCTTTATTTCCAGTATTTGAATATTTAAAAAAA AAACTTCCTAAAATAAACATTAATTTTTCTAAAGATTATTTAAATGGCATTAATATGAAAAATAATCATATTACAGTTTT AGAAAATGTAAGATTTAATCGAGGTGAAACTAAAAACGACATAAATTTATCAAAAAAATATGCTAATTTATGTGATATTT TTGTTATGGACGCTTTTGCTACCGCGCATAGAATAGAATCTTCAACATATGGAATATGTAATTTTGTAAAAAAATCATGT ATTGGACCATTATTATATTCAGAAGTAAAAATTCTTAAAAAAATATTATATAATCCATTGAGACCAATGGTTACTATAGT TGGAGGAGCAAAAGTATCAACAAAATTTAGTTTATTAAAATCATTATTAAAAATTACAGATTATTTATTAGTAGGTGGAG GTATTGCAAATACATTTATTTCTACTTTTTACCCCGTAGGAAAATCTTTATATGAAAAAAATTTTCAAAAAAAAGCTATA AACCTATATAAAACAAAAAAAGTCTTTATACCTATTGATTCTCGTGTAAGTTCTAAATATTCTATAAAATCAGAAGCAAT AATAAGACCAACTTCAAAAATATTACCAAATCAACAAATACTTGATATTGGAGATAAAACAATAAAAAAATTTCAAGAAA TAATAAAAAAATCAAAAACAATTTTATGGAATGGTCCAATGGGAGTTTTTGAATTTCCAAATTTTAGAATAGGTACTGAA AAAATTTCAAAAACTATTGCAAATAGTAATTGTTTTTCTGTAGCCGGGGGGGGAGATACAATCGCGGTTATTGATTTATT TAATTTAAAAAAAAAAATATCTTATATTTCAACGGGTGGTGGATCATTTTTAAAATTTATAGAAGAAAAAACATTACCTA TCATTGAAAAAATAAAAAAACTAAATCAATAG
Upstream 100 bases:
>100_bases TTTAAATATTTATTTATTAAATAACATTAACTTTTTAAATAAAAAGTTAGTATAATAAAAATAAATTAACTATTATATAA TTCATAAAAGGAAAAATATA
Downstream 100 bases:
>100_bases CTATTAAATTTAAAAATTCGATAATATTTTTATATTGATAGAGGAAGAAAATAAATAATGTGTAAAATTTTAGATATAAT AAAACCAGGTGTATTAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRPKEGIYNKNFSLFPVFEYLKK KLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKNDINLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSC IGPLLYSEVKILKKILYNPLRPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKTILWNGPMGVFEFPNFRIGTE KISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGGGSFLKFIEEKTLPIIEKIKKLNQ
Sequences:
>Translated_383_residues MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRPKEGIYNKNFSLFPVFEYLKK KLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKNDINLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSC IGPLLYSEVKILKKILYNPLRPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKTILWNGPMGVFEFPNFRIGTE KISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGGGSFLKFIEEKTLPIIEKIKKLNQ >Mature_383_residues MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRPKEGIYNKNFSLFPVFEYLKK KLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKNDINLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSC IGPLLYSEVKILKKILYNPLRPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKTILWNGPMGVFEFPNFRIGTE KISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGGGSFLKFIEEKTLPIIEKIKKLNQ
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI31543397, Length=415, Percent_Identity=33.2530120481928, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI4505763, Length=411, Percent_Identity=31.3868613138686, Blast_Score=204, Evalue=1e-52, Organism=Escherichia coli, GI1789294, Length=379, Percent_Identity=54.6174142480211, Blast_Score=437, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17508823, Length=411, Percent_Identity=34.0632603406326, Blast_Score=227, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6319857, Length=405, Percent_Identity=34.5679012345679, Blast_Score=216, Evalue=4e-57, Organism=Drosophila melanogaster, GI17136394, Length=411, Percent_Identity=34.3065693430657, Blast_Score=212, Evalue=4e-55, Organism=Drosophila melanogaster, GI24581203, Length=412, Percent_Identity=33.252427184466, Blast_Score=204, Evalue=6e-53,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 43490; Mature: 43490
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRP CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCC KEGIYNKNFSLFPVFEYLKKKLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKND CCCCCCCCCCCHHHHHHHHHHCCEEEEEECHHHHCCCCCCCCCEEEEECCCCCCCCCCCC INLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSCIGPLLYSEVKILKKILYNPL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC RPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI HHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKT HHEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCEECCCHHHHHHHHHHHHHCCE ILWNGPMGVFEFPNFRIGTEKISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGG EEEECCCCCEECCCCEECHHHHHHHHCCCCCEEEECCCCEEEEEEHHHHHHHHHHEECCC GSFLKFIEEKTLPIIEKIKKLNQ HHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRP CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCC KEGIYNKNFSLFPVFEYLKKKLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKND CCCCCCCCCCCHHHHHHHHHHCCEEEEEECHHHHCCCCCCCCCEEEEECCCCCCCCCCCC INLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSCIGPLLYSEVKILKKILYNPL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC RPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI HHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKT HHEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCEECCCHHHHHHHHHHHHHCCE ILWNGPMGVFEFPNFRIGTEKISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGG EEEECCCCCEECCCCEECHHHHHHHHCCCCCEEEECCCCEEEEEEHHHHHHHHHHEECCC GSFLKFIEEKTLPIIEKIKKLNQ HHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA