Definition Buchnera aphidicola str. Cc (Cinara cedri), complete genome.
Accession NC_008513
Length 416,380

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The map label for this gene is pgk [H]

Identifier: 116515204

GI number: 116515204

Start: 312981

End: 314132

Strand: Direct

Name: pgk [H]

Synonym: BCc_278

Alternate gene names: 116515204

Gene position: 312981-314132 (Clockwise)

Preceding gene: 116515202

Following gene: 116515205

Centisome position: 75.17

GC content: 22.74

Gene sequence:

>1152_bases
ATGTACATGAAAAATATTAATTTAAAAAATAAAAGAGTATTTATTCGATTAGATTTAAATGTTCCTATATATAAAAAAAA
AATTATTTCTACTGAACGCATAGATCGATCTATTCCGACTATATTATTAGCATTAAAAAAGAATGCTAAAATAATCTTAG
CTTCTCATTTAGGAAGACCTAAAGAAGGAATATATAATAAAAATTTTTCTTTATTTCCAGTATTTGAATATTTAAAAAAA
AAACTTCCTAAAATAAACATTAATTTTTCTAAAGATTATTTAAATGGCATTAATATGAAAAATAATCATATTACAGTTTT
AGAAAATGTAAGATTTAATCGAGGTGAAACTAAAAACGACATAAATTTATCAAAAAAATATGCTAATTTATGTGATATTT
TTGTTATGGACGCTTTTGCTACCGCGCATAGAATAGAATCTTCAACATATGGAATATGTAATTTTGTAAAAAAATCATGT
ATTGGACCATTATTATATTCAGAAGTAAAAATTCTTAAAAAAATATTATATAATCCATTGAGACCAATGGTTACTATAGT
TGGAGGAGCAAAAGTATCAACAAAATTTAGTTTATTAAAATCATTATTAAAAATTACAGATTATTTATTAGTAGGTGGAG
GTATTGCAAATACATTTATTTCTACTTTTTACCCCGTAGGAAAATCTTTATATGAAAAAAATTTTCAAAAAAAAGCTATA
AACCTATATAAAACAAAAAAAGTCTTTATACCTATTGATTCTCGTGTAAGTTCTAAATATTCTATAAAATCAGAAGCAAT
AATAAGACCAACTTCAAAAATATTACCAAATCAACAAATACTTGATATTGGAGATAAAACAATAAAAAAATTTCAAGAAA
TAATAAAAAAATCAAAAACAATTTTATGGAATGGTCCAATGGGAGTTTTTGAATTTCCAAATTTTAGAATAGGTACTGAA
AAAATTTCAAAAACTATTGCAAATAGTAATTGTTTTTCTGTAGCCGGGGGGGGAGATACAATCGCGGTTATTGATTTATT
TAATTTAAAAAAAAAAATATCTTATATTTCAACGGGTGGTGGATCATTTTTAAAATTTATAGAAGAAAAAACATTACCTA
TCATTGAAAAAATAAAAAAACTAAATCAATAG

Upstream 100 bases:

>100_bases
TTTAAATATTTATTTATTAAATAACATTAACTTTTTAAATAAAAAGTTAGTATAATAAAAATAAATTAACTATTATATAA
TTCATAAAAGGAAAAATATA

Downstream 100 bases:

>100_bases
CTATTAAATTTAAAAATTCGATAATATTTTTATATTGATAGAGGAAGAAAATAAATAATGTGTAAAATTTTAGATATAAT
AAAACCAGGTGTATTAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRPKEGIYNKNFSLFPVFEYLKK
KLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKNDINLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSC
IGPLLYSEVKILKKILYNPLRPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI
NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKTILWNGPMGVFEFPNFRIGTE
KISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGGGSFLKFIEEKTLPIIEKIKKLNQ

Sequences:

>Translated_383_residues
MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRPKEGIYNKNFSLFPVFEYLKK
KLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKNDINLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSC
IGPLLYSEVKILKKILYNPLRPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI
NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKTILWNGPMGVFEFPNFRIGTE
KISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGGGSFLKFIEEKTLPIIEKIKKLNQ
>Mature_383_residues
MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRPKEGIYNKNFSLFPVFEYLKK
KLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKNDINLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSC
IGPLLYSEVKILKKILYNPLRPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI
NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKTILWNGPMGVFEFPNFRIGTE
KISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGGGSFLKFIEEKTLPIIEKIKKLNQ

Specific function: Second phase of glycolysis; second step. [C]

COG id: COG0126

COG function: function code G; 3-phosphoglycerate kinase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphoglycerate kinase family [H]

Homologues:

Organism=Homo sapiens, GI31543397, Length=415, Percent_Identity=33.2530120481928, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI4505763, Length=411, Percent_Identity=31.3868613138686, Blast_Score=204, Evalue=1e-52,
Organism=Escherichia coli, GI1789294, Length=379, Percent_Identity=54.6174142480211, Blast_Score=437, Evalue=1e-124,
Organism=Caenorhabditis elegans, GI17508823, Length=411, Percent_Identity=34.0632603406326, Blast_Score=227, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6319857, Length=405, Percent_Identity=34.5679012345679, Blast_Score=216, Evalue=4e-57,
Organism=Drosophila melanogaster, GI17136394, Length=411, Percent_Identity=34.3065693430657, Blast_Score=212, Evalue=4e-55,
Organism=Drosophila melanogaster, GI24581203, Length=412, Percent_Identity=33.252427184466, Blast_Score=204, Evalue=6e-53,

Paralogues:

None

Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001576
- InterPro:   IPR015901
- InterPro:   IPR015911
- InterPro:   IPR015824 [H]

Pfam domain/function: PF00162 PGK [H]

EC number: =2.7.2.3 [H]

Molecular weight: Translated: 43490; Mature: 43490

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00111 PGLYCERATE_KINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRP
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCC
KEGIYNKNFSLFPVFEYLKKKLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKND
CCCCCCCCCCCHHHHHHHHHHCCEEEEEECHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
INLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSCIGPLLYSEVKILKKILYNPL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
RPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI
HHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKT
HHEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCEECCCHHHHHHHHHHHHHCCE
ILWNGPMGVFEFPNFRIGTEKISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGG
EEEECCCCCEECCCCEECHHHHHHHHCCCCCEEEECCCCEEEEEEHHHHHHHHHHEECCC
GSFLKFIEEKTLPIIEKIKKLNQ
HHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MYMKNINLKNKRVFIRLDLNVPIYKKKIISTERIDRSIPTILLALKKNAKIILASHLGRP
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCC
KEGIYNKNFSLFPVFEYLKKKLPKININFSKDYLNGINMKNNHITVLENVRFNRGETKND
CCCCCCCCCCCHHHHHHHHHHCCEEEEEECHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
INLSKKYANLCDIFVMDAFATAHRIESSTYGICNFVKKSCIGPLLYSEVKILKKILYNPL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
RPMVTIVGGAKVSTKFSLLKSLLKITDYLLVGGGIANTFISTFYPVGKSLYEKNFQKKAI
HHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NLYKTKKVFIPIDSRVSSKYSIKSEAIIRPTSKILPNQQILDIGDKTIKKFQEIIKKSKT
HHEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCEECCCHHHHHHHHHHHHHCCE
ILWNGPMGVFEFPNFRIGTEKISKTIANSNCFSVAGGGDTIAVIDLFNLKKKISYISTGG
EEEECCCCCEECCCCEECHHHHHHHHCCCCCEEEECCCCEEEEEEHHHHHHHHHHEECCC
GSFLKFIEEKTLPIIEKIKKLNQ
HHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA