Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is miaB
Identifier: 116515198
GI number: 116515198
Start: 305849
End: 307156
Strand: Direct
Name: miaB
Synonym: BCc_272
Alternate gene names: 116515198
Gene position: 305849-307156 (Clockwise)
Preceding gene: 116515197
Following gene: 116515199
Centisome position: 73.45
GC content: 20.72
Gene sequence:
>1308_bases ATGAATGAACATGATTCCTCAATCATAGAAAATATATTAAAAAAAACAAATTTATATATAATTACAAAAAAACCAGAAAT ATCTGATATTTTAATTTTAAATACATGCTCTATTAGAGAAAAAGCTCAAGAAAAATTATTCCATCAATTAGGACGTTGGA AAAAACTAAAACAAAAAAATTCAAAAATATTAATTGCTGTAGGAGGATGTGTTGCTGTTCAAGAAGGAAAGAAAATTTAT AAAAGAGCAAAATTTATTGATATAATTTTTGGACCACAAACATTACATAAATTACCTAAGTTATTAATAGAATCAAATAA AAAAAAAAGTCTTATTATAAATATTAAAAAAAAATCATTAAAAAAATTTAATTATACAATAAATAAAAATACAAATATAA AAAAAAAATTTTCTTCATTTGTAACTATTATGGAAGGATGTAATAAATATTGTTCTTTTTGTATTGTTCCATATACAAGA GGAAAAGAAGTTAGTAGAAATAATAAAAAAATAATTTCAGAAATAATAGAATTATCTAAAAAAGGAGTACGTGAAATAAC ACTTTTAGGACAAAATGTAAATGCATATAAATTTTCTGATACTTTTAATAAAAAAAATTATAGTTTTTCAGATTTATTAT ACTCAATATCAGAAATCCCTAGAATTGATAGAATTCGATTTATTACCAGTCATCCTGTGGAATTTAATAACAATATAATA GAAGCATATAAAAAAATTCCTAAATTAACAAATTTTCTACACTTACCGGTACAAAGTGGTTCTAATAAAATTTTAAAATT AATGAAACGAGGATATACTATAGAAAAATATGAAAACATTGTAAATAAAATAAAAAAAATACGTCCAAAAATAAATATTA GTTCAGATTTTATTATCGGATTTCCAGGTGAAACTAAAGAAGATTTTCAAAAAACAATTTATTTTATTTCAAAAATTAAT TTCGATACAAGTTATAGTTTTATTTACTCAAAAAGACCTCGAACAAGAGCTTCTAAACTAGAAGATAATGTAACGATGGA AGAAAAAAAAAAGAGATTATATAAAGTTCAACAAAAAATCAATCAACAAGCATTTCAATGGAAAAGAAGAAGTACTGAAC AAATAGTTTTAGTAGAAGGAATTTCAAAAAACAATATACAAGAATTATATGGAAGAACAGAAAATAATAGAACAGTTTTT TTTGAAGGTAATCCTAAATTTATTGGAAACTTTATAAAATTAAAAATTATAAGTATTAAATATAATACTTTTCTAAAAGG AAAAATTATTTCTAATAATTATTTTTAG
Upstream 100 bases:
>100_bases ACTAAAAAAAATATAAATAAATATTATTTAAAAGTTAAAAATTATTTATGAAAAAAAACAAAAAAAAAAAAAAATATATA TTTAAACTTGGGGATGTCAA
Downstream 100 bases:
>100_bases TAATAGAATAATTAAAAATTTTGTAAAAAATTGATGAATATAAAGAAAAACTTAATGAAAATTGATATTCAAAATGTATG TAAGAAAAATATTTTTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: tRNA-i(6)A37 methylthiotransferase
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLKQKNSKILIAVGGCVAVQEGKKIY KRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIKKKSLKKFNYTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTR GKEVSRNNKKIISEIIELSKKGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVEFNNNII EAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINISSDFIIGFPGETKEDFQKTIYFISKIN FDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLYKVQQKINQQAFQWKRRSTEQIVLVEGISKNNIQELYGRTENNRTVF FEGNPKFIGNFIKLKIISIKYNTFLKGKIISNNYF
Sequences:
>Translated_435_residues MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLKQKNSKILIAVGGCVAVQEGKKIY KRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIKKKSLKKFNYTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTR GKEVSRNNKKIISEIIELSKKGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVEFNNNII EAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINISSDFIIGFPGETKEDFQKTIYFISKIN FDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLYKVQQKINQQAFQWKRRSTEQIVLVEGISKNNIQELYGRTENNRTVF FEGNPKFIGNFIKLKIISIKYNTFLKGKIISNNYF >Mature_435_residues MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLKQKNSKILIAVGGCVAVQEGKKIY KRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIKKKSLKKFNYTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTR GKEVSRNNKKIISEIIELSKKGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVEFNNNII EAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINISSDFIIGFPGETKEDFQKTIYFISKIN FDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLYKVQQKINQQAFQWKRRSTEQIVLVEGISKNNIQELYGRTENNRTVF FEGNPKFIGNFIKLKIISIKYNTFLKGKIISNNYF
Specific function: Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRAM domain
Homologues:
Organism=Homo sapiens, GI28872782, Length=471, Percent_Identity=33.5456475583864, Blast_Score=266, Evalue=3e-71, Organism=Homo sapiens, GI28872784, Length=471, Percent_Identity=33.5456475583864, Blast_Score=266, Evalue=4e-71, Organism=Homo sapiens, GI93277076, Length=427, Percent_Identity=26.2295081967213, Blast_Score=140, Evalue=3e-33, Organism=Escherichia coli, GI1786882, Length=432, Percent_Identity=53.2407407407407, Blast_Score=497, Evalue=1e-142, Organism=Escherichia coli, GI1787057, Length=416, Percent_Identity=25, Blast_Score=143, Evalue=2e-35, Organism=Caenorhabditis elegans, GI17553146, Length=465, Percent_Identity=30.9677419354839, Blast_Score=227, Evalue=1e-59, Organism=Caenorhabditis elegans, GI71996771, Length=222, Percent_Identity=27.9279279279279, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI21356207, Length=423, Percent_Identity=33.5697399527187, Blast_Score=268, Evalue=5e-72, Organism=Drosophila melanogaster, GI19922432, Length=399, Percent_Identity=24.0601503759398, Blast_Score=119, Evalue=4e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MIAB_BUCCC (Q057G5)
Other databases:
- EMBL: CP000263 - RefSeq: YP_802827.1 - ProteinModelPortal: Q057G5 - SMR: Q057G5 - STRING: Q057G5 - EnsemblBacteria: EBBUCT00000001449 - GeneID: 4440858 - GenomeReviews: CP000263_GR - KEGG: bcc:BCc_272 - eggNOG: COG0621 - GeneTree: EBGT00050000007978 - HOGENOM: HBG457663 - OMA: EVRTYGC - BioCyc: BAPH372461:BCC_272-MONOMER - GO: GO:0005737 - HAMAP: MF_01864 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006463 - InterPro: IPR007197 - InterPro: IPR002792 - PANTHER: PTHR11918 - SMART: SM00729 - TIGRFAMs: TIGR01574 - TIGRFAMs: TIGR00089
Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004
EC number: NA
Molecular weight: Translated: 50961; Mature: 50961
Theoretical pI: Translated: 10.67; Mature: 10.67
Prosite motif: PS51449 MTTASE_N; PS01278 MTTASE_RADICAL; PS50926 TRAM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLKQKN CCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC SKILIAVGGCVAVQEGKKIYKRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIKKKSL CEEEEEECCEEEEHHHHHHHHHHHEEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEHHHH KKFNYTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTRGKEVSRNNKKIISEIIELSK HHHCEEECCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHH KGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVEFNNNII CCCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH EAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINISSDFIIG HHHHHHHHHHCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEECCCCEEEE FPGETKEDFQKTIYFISKINFDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLYKVQQKI CCCCCHHHHHHHHHHHHEECCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHH NQQAFQWKRRSTEQIVLVEGISKNNIQELYGRTENNRTVFFEGNPKFIGNFIKLKIISIK HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEECCCHHHHCCEEEEEEEEEE YNTFLKGKIISNNYF ECCEEEEEEECCCCC >Mature Secondary Structure MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLKQKN CCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC SKILIAVGGCVAVQEGKKIYKRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIKKKSL CEEEEEECCEEEEHHHHHHHHHHHEEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEHHHH KKFNYTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTRGKEVSRNNKKIISEIIELSK HHHCEEECCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHH KGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVEFNNNII CCCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH EAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINISSDFIIG HHHHHHHHHHCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEECCCCEEEE FPGETKEDFQKTIYFISKINFDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLYKVQQKI CCCCCHHHHHHHHHHHHEECCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHH NQQAFQWKRRSTEQIVLVEGISKNNIQELYGRTENNRTVFFEGNPKFIGNFIKLKIISIK HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEECCCHHHHCCEEEEEEEEEE YNTFLKGKIISNNYF ECCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA