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The map label for this gene is ybeY [C]

Identifier: 116515199

GI number: 116515199

Start: 307190

End: 307660

Strand: Direct

Name: ybeY [C]

Synonym: BCc_273

Alternate gene names: 116515199

Gene position: 307190-307660 (Clockwise)

Preceding gene: 116515198

Following gene: 116515200

Centisome position: 73.78

GC content: 17.62

Gene sequence:

>471_bases
ATGAATATAAAGAAAAACTTAATGAAAATTGATATTCAAAATGTATGTAAGAAAAATATTTTTTTTCCAAAAAAAAAATA
TTTTTTTTTATGGTTAAAAAATATTTTTAAAAATAAAAAAATAGAAATAACTATTAGAATAGTTGACATGTTAGAAATGA
AATTTCTTAATAAAAAATATAAAAAAAAAAATTCTTTAACTAATGTACTATCATTTCAATCACCGGATTCGATAAAAATT
AAACATAGATTTTTAAATTATATAGGAGATATAATTTTATGTGCTCCATATATTAACAAAGAGGCAAATATTTTAAAAAA
AAAAAAAATAGAACTTTGGGCGCATATGACTATTCATTCAACTTTACATTTACTACATTATTCACATAAAGATTCTAAAT
CAAAAAAAAACATGCAAAAAACTGAAATATATATTATGAAAAAGTTAGGATATAATAATCCATATAATTAA

Upstream 100 bases:

>100_bases
AAAAATTATAAGTATTAAATATAATACTTTTCTAAAAGGAAAAATTATTTCTAATAATTATTTTTAGTAATAGAATAATT
AAAAATTTTGTAAAAAATTG

Downstream 100 bases:

>100_bases
ATAATATATAATTTATTATTAAATTTGAAAATATTTTAAATACATAAAAAACTATGAAAAATAATAATTATAATCCTAAA
AAGATTGAAAAATATGTTCA

Product: YbeY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MNIKKNLMKIDIQNVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIRIVDMLEMKFLNKKYKKKNSLTNVLSFQSPDSIKI
KHRFLNYIGDIILCAPYINKEANILKKKKIELWAHMTIHSTLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPYN

Sequences:

>Translated_156_residues
MNIKKNLMKIDIQNVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIRIVDMLEMKFLNKKYKKKNSLTNVLSFQSPDSIKI
KHRFLNYIGDIILCAPYINKEANILKKKKIELWAHMTIHSTLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPYN
>Mature_156_residues
MNIKKNLMKIDIQNVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIRIVDMLEMKFLNKKYKKKNSLTNVLSFQSPDSIKI
KHRFLNYIGDIILCAPYINKEANILKKKKIELWAHMTIHSTLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPYN

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=150, Percent_Identity=35.3333333333333, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BUCCC (Q057G4)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802828.1
- ProteinModelPortal:   Q057G4
- SMR:   Q057G4
- STRING:   Q057G4
- EnsemblBacteria:   EBBUCT00000001302
- GeneID:   4440859
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_273
- eggNOG:   COG0319
- GeneTree:   EBGT00050000007961
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- BioCyc:   BAPH372461:BCC_273-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18842; Mature: 18842

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKKNLMKIDIQNVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIRIVDMLEMKFLNKKY
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHH
KKKNSLTNVLSFQSPDSIKIKHRFLNYIGDIILCAPYINKEANILKKKKIELWAHMTIHS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
TLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPYN
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNIKKNLMKIDIQNVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIRIVDMLEMKFLNKKY
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHH
KKKNSLTNVLSFQSPDSIKIKHRFLNYIGDIILCAPYINKEANILKKKKIELWAHMTIHS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
TLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPYN
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA