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The map label for this gene is csrA

Identifier: 116515186

GI number: 116515186

Start: 289786

End: 289965

Strand: Direct

Name: csrA

Synonym: BCc_255

Alternate gene names: 116515186

Gene position: 289786-289965 (Clockwise)

Preceding gene: 116515185

Following gene: 116515189

Centisome position: 69.6

GC content: 26.67

Gene sequence:

>180_bases
ATGCTTATTTTAACTCGTCGAATTGGCGAAACATTAATAATCGGCGATGAAATAACAGTAACTCTTTTAGGGATTAAAGG
AAATCAAATTCGTGTTGGTATTAATGCTCCTAAAAAAATTTCTGTACATCGAGAAGAAATATATAAAAAAATTCAATTAG
AAAAAAAAAATCTACTTTAA

Upstream 100 bases:

>100_bases
TTTAAAAATTTAAAATTATTAACAATTTTAATGATTAAAAATAAATTTGTTTATATTATTATAATATAAACATTTTTTTA
CAAAAAGGGATAAAAAGAAA

Downstream 100 bases:

>100_bases
TTTATTAAAAATAAATTTTATTCTGTATTTTTAAAAAAAAATACAGAATATTATATTTATAAAATAAAAATTTTAAATTT
TTAAATTTTTTATTTATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 59; Mature: 59

Protein sequence:

>59_residues
MLILTRRIGETLIIGDEITVTLLGIKGNQIRVGINAPKKISVHREEIYKKIQLEKKNLL

Sequences:

>Translated_59_residues
MLILTRRIGETLIIGDEITVTLLGIKGNQIRVGINAPKKISVHREEIYKKIQLEKKNLL
>Mature_59_residues
MLILTRRIGETLIIGDEITVTLLGIKGNQIRVGINAPKKISVHREEIYKKIQLEKKNLL

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=73.6842105263158, Blast_Score=98, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_BUCCC (Q057H7)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802815.1
- ProteinModelPortal:   Q057H7
- SMR:   Q057H7
- STRING:   Q057H7
- EnsemblBacteria:   EBBUCT00000001259
- GeneID:   4440759
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_255
- eggNOG:   COG1551
- GeneTree:   EBGT00050000008154
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- BioCyc:   BAPH372461:BCC_255-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 6723; Mature: 6723

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRIGETLIIGDEITVTLLGIKGNQIRVGINAPKKISVHREEIYKKIQLEKKNLL
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLILTRRIGETLIIGDEITVTLLGIKGNQIRVGINAPKKISVHREEIYKKIQLEKKNLL
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA