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The map label for this gene is rimM

Identifier: 116515179

GI number: 116515179

Start: 281693

End: 282202

Strand: Direct

Name: rimM

Synonym: BCc_247

Alternate gene names: 116515179

Gene position: 281693-282202 (Clockwise)

Preceding gene: 116515178

Following gene: 116515180

Centisome position: 67.65

GC content: 14.71

Gene sequence:

>510_bases
ATGATTACAATAGGAAAAATAGGTAAACCATATGGAATTCTAGGTTGGTTTCATATGTTTTCTTATACAGAAAAAAAAAA
TAATATTTTTAATTATTTTCCGTGGAAATTAGAAAAATCAAATATTTTATTATATAAAAATAATATTATACATTATAAAA
CACATACAGATCATTTTTTAATAAAAATAAAAGATATAAATAATCGAACACAAACTTTAAATTTTATAAAACAAAATATA
TTAATCAAAAATTTTCAATTACCAAAATTAAAAAATAAAGAATATTATTGGAATGATATTTTCTCATGTTATATATTTGA
TTTAAAAAAAAAAAAAATAGGATCTATAAAAAATATTATAGACAATAAATTTTATTGTACTTTAGAAATTTTATATAAAA
AAAAAAAAATATATATACCTTTTATACAACCAAATTTCATCAAGAAAATAGATATAAAAAAAAAAATTATAGTTATTGAC
TTAACTAATTTAAATAACCAATTAATTTAA

Upstream 100 bases:

>100_bases
AAAAAGGAGCTAAAAAAACGAATAGAATTAAAAATTTATTAATACAATTTAAAAAAATATCATCAAATAACATTAAAATA
TAAATTTTTACTTAACAATT

Downstream 100 bases:

>100_bases
ATATACAAAAAATGATATATTTTACTGTTATTAGTATTTTTCCAAATTTATTTAAAAATATTTTTAAATATGGAATAATA
TCCCAAGCAATCAAAAAAAA

Product: 16s rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFLIKIKDINNRTQTLNFIKQNI
LIKNFQLPKLKNKEYYWNDIFSCYIFDLKKKKIGSIKNIIDNKFYCTLEILYKKKKIYIPFIQPNFIKKIDIKKKIIVID
LTNLNNQLI

Sequences:

>Translated_169_residues
MITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFLIKIKDINNRTQTLNFIKQNI
LIKNFQLPKLKNKEYYWNDIFSCYIFDLKKKKIGSIKNIIDNKFYCTLEILYKKKKIYIPFIQPNFIKKIDIKKKIIVID
LTNLNNQLI
>Mature_169_residues
MITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFLIKIKDINNRTQTLNFIKQNI
LIKNFQLPKLKNKEYYWNDIFSCYIFDLKKKKIGSIKNIIDNKFYCTLEILYKKKKIYIPFIQPNFIKKIDIKKKIIVID
LTNLNNQLI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=165, Percent_Identity=27.8787878787879, Blast_Score=97, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BUCCC (Q057I4)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802808.1
- ProteinModelPortal:   Q057I4
- SMR:   Q057I4
- STRING:   Q057I4
- EnsemblBacteria:   EBBUCT00000001520
- GeneID:   4440751
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_247
- eggNOG:   COG0806
- GeneTree:   EBGT00050000008004
- HOGENOM:   HBG703775
- OMA:   RVYIDIN
- BioCyc:   BAPH372461:BCC_247-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20520; Mature: 20520

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFL
CEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEECCEEEEEECCCEEE
IKIKDINNRTQTLNFIKQNILIKNFQLPKLKNKEYYWNDIFSCYIFDLKKKKIGSIKNII
EEEEECCCCHHHHHHHHHHEEEECCCCCCCCCCCEECCCEEEEEEEEECHHHHHHHHHHH
DNKFYCTLEILYKKKKIYIPFIQPNFIKKIDIKKKIIVIDLTNLNNQLI
CCCEEEEEEEEEECCEEEEEEECCCCEEEECCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFL
CEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEECCEEEEEECCCEEE
IKIKDINNRTQTLNFIKQNILIKNFQLPKLKNKEYYWNDIFSCYIFDLKKKKIGSIKNII
EEEEECCCCHHHHHHHHHHEEEECCCCCCCCCCCEECCCEEEEEEEEECHHHHHHHHHHH
DNKFYCTLEILYKKKKIYIPFIQPNFIKKIDIKKKIIVIDLTNLNNQLI
CCCEEEEEEEEEECCEEEEEEECCCCEEEECCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA