Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is flgF [C]
Identifier: 116515144
GI number: 116515144
Start: 244844
End: 245548
Strand: Direct
Name: flgF [C]
Synonym: BCc_211
Alternate gene names: 116515144
Gene position: 244844-245548 (Clockwise)
Preceding gene: 116515142
Following gene: 116515145
Centisome position: 58.8
GC content: 20.43
Gene sequence:
>705_bases ATGAATAATATAATAAATTCTATAATTACATTAGATGATAGAAATTTAATTAGTAAAGAAACTATAATAAATCAAGATTA TGATAATATAGATACAGAATTTTATAAAAAATATGCTTACAACATTCAAACAAATTCTAGTGATGATCAAATAACAAACA AAAAAATAGTAGATATAAATTCAGATGATAATTCATCATTACAATCTTATTCAAATTCTTCAATTGATGAAGACACAGAA ACTGGTTGGTTTTCTGTTTTTGATGATGATGGATATGAAGGGTTTTTACGTGAAGGTCATATTGCTATTAATGAAAATCG CGAATTATGTATGAATAATTATACGTTATTAAATACTGATGAAAAACCTATTATAGTTCCTGAAAATAAAAAAATTTTAA TTAAAATGGACGGTACAATTGTTACTAAAGAAGATAATAATGAAATAAATTATAAACCAATATTTTTAGGACAATTAAAA TTCATCACTTTAAATAATAATGATGTTATATCTCGTAATGAAAGTGAAATTTTTGATTTAAGTTATTCTGGTTTAGAAAA ATATAAAAACAACAATTTAGAAACAAAATCTAATTATGTGTTAAAAAATACTATCAGAAAAAATGATATTAAAAAAACAA ATAATTTGATAAATACATTAAATGTTATAAGATCACTTGAATCTGATATGAAAATTAATTCATAA
Upstream 100 bases:
>100_bases AAATTAAATTATATAAAAATTTACATAAATTTTTTTTTATAAAAATTATTTATTAAATAATATAAATTTATATTTATAAT ATTAAAAGTAGGAATAATAT
Downstream 100 bases:
>100_bases AATAGTATACAAATAAAATTTTTATAATTTATTTTAAATAAAAAATATTTTTTATTTGACAGAACACATTGTATAGAAAC TAGATGAAAATCTGTTTCTA
Product: FlgF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MNNIINSIITLDDRNLISKETIINQDYDNIDTEFYKKYAYNIQTNSSDDQITNKKIVDINSDDNSSLQSYSNSSIDEDTE TGWFSVFDDDGYEGFLREGHIAINENRELCMNNYTLLNTDEKPIIVPENKKILIKMDGTIVTKEDNNEINYKPIFLGQLK FITLNNNDVISRNESEIFDLSYSGLEKYKNNNLETKSNYVLKNTIRKNDIKKTNNLINTLNVIRSLESDMKINS
Sequences:
>Translated_234_residues MNNIINSIITLDDRNLISKETIINQDYDNIDTEFYKKYAYNIQTNSSDDQITNKKIVDINSDDNSSLQSYSNSSIDEDTE TGWFSVFDDDGYEGFLREGHIAINENRELCMNNYTLLNTDEKPIIVPENKKILIKMDGTIVTKEDNNEINYKPIFLGQLK FITLNNNDVISRNESEIFDLSYSGLEKYKNNNLETKSNYVLKNTIRKNDIKKTNNLINTLNVIRSLESDMKINS >Mature_234_residues MNNIINSIITLDDRNLISKETIINQDYDNIDTEFYKKYAYNIQTNSSDDQITNKKIVDINSDDNSSLQSYSNSSIDEDTE TGWFSVFDDDGYEGFLREGHIAINENRELCMNNYTLLNTDEKPIIVPENKKILIKMDGTIVTKEDNNEINYKPIFLGQLK FITLNNNDVISRNESEIFDLSYSGLEKYKNNNLETKSNYVLKNTIRKNDIKKTNNLINTLNVIRSLESDMKINS
Specific function: Unknown
COG id: COG4787
COG function: function code N; Flagellar basal body rod protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27088; Mature: 27088
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNIINSIITLDDRNLISKETIINQDYDNIDTEFYKKYAYNIQTNSSDDQITNKKIVDIN CCCHHHHEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHEEEEECCCCCCCCCCCEEEEEC SDDNSSLQSYSNSSIDEDTETGWFSVFDDDGYEGFLREGHIAINENRELCMNNYTLLNTD CCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEECCCEEEECCCCEEECCCEEEECC EKPIIVPENKKILIKMDGTIVTKEDNNEINYKPIFLGQLKFITLNNNDVISRNESEIFDL CCCEEEECCCEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEEECCCCEECCCCCEEEEE SYSGLEKYKNNNLETKSNYVLKNTIRKNDIKKTNNLINTLNVIRSLESDMKINS CHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNNIINSIITLDDRNLISKETIINQDYDNIDTEFYKKYAYNIQTNSSDDQITNKKIVDIN CCCHHHHEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHEEEEECCCCCCCCCCCEEEEEC SDDNSSLQSYSNSSIDEDTETGWFSVFDDDGYEGFLREGHIAINENRELCMNNYTLLNTD CCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEECCCEEEECCCCEEECCCEEEECC EKPIIVPENKKILIKMDGTIVTKEDNNEINYKPIFLGQLKFITLNNNDVISRNESEIFDL CCCEEEECCCEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEEECCCCEECCCCCEEEEE SYSGLEKYKNNNLETKSNYVLKNTIRKNDIKKTNNLINTLNVIRSLESDMKINS CHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA