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The map label for this gene is himD

Identifier: 116515125

GI number: 116515125

Start: 222000

End: 222293

Strand: Reverse

Name: himD

Synonym: BCc_189

Alternate gene names: 116515125

Gene position: 222293-222000 (Counterclockwise)

Preceding gene: 116515126

Following gene: 116515124

Centisome position: 53.39

GC content: 22.11

Gene sequence:

>294_bases
ATGATAAAATCAGAATTATTTGAACGAATTACTGAAAAAAAAACTTATATTCCAGCAAAAATTATTGAATATGTAGTAAA
AAATATTTTAGAATATATGTCATTATCGTTAGAAAAAGGTAATAGAATAGAAATTAGAGGTTTTGGAAGTTTTTCTTTGC
ATTATAGATTTGCTAGAATAGGAAGAAATCCAAAAACAGGTGAAAAAGTTTATTTAAAAGAAAAATATGTTCCACATTTT
AAACCAGGAAAACAATTAAGGGATCGAATAAATAATATATATAAAAAAATTTAG

Upstream 100 bases:

>100_bases
CAATAATATTGATACAATTATGACGAAAGCTTTTGAAGAAGCTAAAAATTAAAAGACTAAAATATTACAATATTTTATAA
TATTTTTATTTAGAGGGTAT

Downstream 100 bases:

>100_bases
TATAATTAATTTTTAATATATACGAGTATCACTATTCGGTAAATTTTTATAATTCAGCAATTATTAGAGTATATTGTACT
CCAATAATTGCTCAAAAAGG

Product: HimD

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARIGRNPKTGEKVYLKEKYVPHF
KPGKQLRDRINNIYKKI

Sequences:

>Translated_97_residues
MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARIGRNPKTGEKVYLKEKYVPHF
KPGKQLRDRINNIYKKI
>Mature_97_residues
MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARIGRNPKTGEKVYLKEKYVPHF
KPGKQLRDRINNIYKKI

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=65.9340659340659, Blast_Score=132, Evalue=4e-33,
Organism=Escherichia coli, GI1786644, Length=94, Percent_Identity=32.9787234042553, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1788005, Length=96, Percent_Identity=32.2916666666667, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_BUCCC (Q057N8)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802754.1
- ProteinModelPortal:   Q057N8
- SMR:   Q057N8
- STRING:   Q057N8
- EnsemblBacteria:   EBBUCT00000001545
- GeneID:   4440683
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_189
- eggNOG:   COG0776
- GeneTree:   EBGT00050000007762
- HOGENOM:   HBG705085
- OMA:   VKRRDAR
- BioCyc:   BAPH372461:BCC_189-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11611; Mature: 11611

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARI
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
GRNPKTGEKVYLKEKYVPHFKPGKQLRDRINNIYKKI
CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARI
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
GRNPKTGEKVYLKEKYVPHFKPGKQLRDRINNIYKKI
CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA