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The map label for this gene is dapD [H]

Identifier: 116515080

GI number: 116515080

Start: 165214

End: 166041

Strand: Reverse

Name: dapD [H]

Synonym: BCc_140

Alternate gene names: 116515080

Gene position: 166041-165214 (Counterclockwise)

Preceding gene: 116515081

Following gene: 116515079

Centisome position: 39.88

GC content: 23.31

Gene sequence:

>828_bases
ATGATACAAATAAAAAAAAAAATAGAAAAAATTTTTTTAAAAAAAACAAAAAAAGAAAATTATAAGATATCAAAAGAAGA
AAAAAAAATAATAAAAAAAACAATAAAACTATTAAATTCTGGTGAAATAAGAATTTCAAAAAAAAATAATAATACTTGGA
TTACATATCAATGGATAAAAAAAGCTGTATTATTATATTTATATTCACAAGATAATAAAATTATTAAAATATCAAATAAT
TCTTTTTATGATAAAATATCGTTAAAATATAAAAATTATAATAAAATCGATTTTATTAATGATGCTATACGTGTAGTTCC
TAATGCAACAGTCAGATTTGGTTCTTTTATTGATAAAAATGTCATAATAATGCCTAGTTTTATTAATATCGGCGCGTATA
TTGGGAAAAATACTATGATTGATACTTGGGCTACTATTGGATCATGTGCTCAAATTGGTCGTAATGTTCATATATCTGGA
GGAGTAGGAATAGGTGGAGTATTAGAACCATTACAGAACAATCCAACAATTATAGAAGATAACTGTTTTATTGGAGCTAG
ATCTGAAATCGTTGAAGGAGTTATTATTGAAAAAAATTCAGTAATTTCTATGGGAGTATATATAGGGCAAAGCACTAAAA
TTTATGATCGAGAAACAAAAAAAATATTTTATGGACGAGTTCCTAAAGGATCTGTTGTAGTACCAGGAACTTTACCTTCA
AAAATAGGAAATATAAATTTATATTGCGCAGTTATTGTAAAAAAAGTTGATAAAAAAACATTAGATAAAACAGAATTAAA
TAAATTACTTCGTGCTATTAAATATTAA

Upstream 100 bases:

>100_bases
TTTTAATAATACTACAATTAAACTTATTAAATTTTATTAAAATATAACTATTAATACATATTCAATAATAAAAAATAATT
ATATAGGTTATTAATTAAAA

Downstream 100 bases:

>100_bases
AATATATAATAAAATATTATCTGTATAATTTTACAGATAATGTTTTAATTAAAAAAAAAAATTTTTTATTTATAATTAAA
TTATAAAAAATATATTAATT

Product: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MIQIKKKIEKIFLKKTKKENYKISKEEKKIIKKTIKLLNSGEIRISKKNNNTWITYQWIKKAVLLYLYSQDNKIIKISNN
SFYDKISLKYKNYNKIDFINDAIRVVPNATVRFGSFIDKNVIIMPSFINIGAYIGKNTMIDTWATIGSCAQIGRNVHISG
GVGIGGVLEPLQNNPTIIEDNCFIGARSEIVEGVIIEKNSVISMGVYIGQSTKIYDRETKKIFYGRVPKGSVVVPGTLPS
KIGNINLYCAVIVKKVDKKTLDKTELNKLLRAIKY

Sequences:

>Translated_275_residues
MIQIKKKIEKIFLKKTKKENYKISKEEKKIIKKTIKLLNSGEIRISKKNNNTWITYQWIKKAVLLYLYSQDNKIIKISNN
SFYDKISLKYKNYNKIDFINDAIRVVPNATVRFGSFIDKNVIIMPSFINIGAYIGKNTMIDTWATIGSCAQIGRNVHISG
GVGIGGVLEPLQNNPTIIEDNCFIGARSEIVEGVIIEKNSVISMGVYIGQSTKIYDRETKKIFYGRVPKGSVVVPGTLPS
KIGNINLYCAVIVKKVDKKTLDKTELNKLLRAIKY
>Mature_275_residues
MIQIKKKIEKIFLKKTKKENYKISKEEKKIIKKTIKLLNSGEIRISKKNNNTWITYQWIKKAVLLYLYSQDNKIIKISNN
SFYDKISLKYKNYNKIDFINDAIRVVPNATVRFGSFIDKNVIIMPSFINIGAYIGKNTMIDTWATIGSCAQIGRNVHISG
GVGIGGVLEPLQNNPTIIEDNCFIGARSEIVEGVIIEKNSVISMGVYIGQSTKIYDRETKKIFYGRVPKGSVVVPGTLPS
KIGNINLYCAVIVKKVDKKTLDKTELNKLLRAIKY

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=273, Percent_Identity=57.5091575091575, Blast_Score=322, Evalue=1e-89,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 31176; Mature: 31176

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIKKKIEKIFLKKTKKENYKISKEEKKIIKKTIKLLNSGEIRISKKNNNTWITYQWIK
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHH
KAVLLYLYSQDNKIIKISNNSFYDKISLKYKNYNKIDFINDAIRVVPNATVRFGSFIDKN
HEEEEEEECCCCEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC
VIIMPSFINIGAYIGKNTMIDTWATIGSCAQIGRNVHISGGVGIGGVLEPLQNNPTIIED
EEEEECHHHHHHHHCCCCEEHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCEEEC
NCFIGARSEIVEGVIIEKNSVISMGVYIGQSTKIYDRETKKIFYGRVPKGSVVVPGTLPS
CEEECCHHHHHCEEEEECCCEEEEEEEECCCCEEECCCCCEEEEECCCCCCEEECCCCCC
KIGNINLYCAVIVKKVDKKTLDKTELNKLLRAIKY
CCCCCEEEEEEEHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIQIKKKIEKIFLKKTKKENYKISKEEKKIIKKTIKLLNSGEIRISKKNNNTWITYQWIK
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHH
KAVLLYLYSQDNKIIKISNNSFYDKISLKYKNYNKIDFINDAIRVVPNATVRFGSFIDKN
HEEEEEEECCCCEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC
VIIMPSFINIGAYIGKNTMIDTWATIGSCAQIGRNVHISGGVGIGGVLEPLQNNPTIIED
EEEEECHHHHHHHHCCCCEEHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCEEEC
NCFIGARSEIVEGVIIEKNSVISMGVYIGQSTKIYDRETKKIFYGRVPKGSVVVPGTLPS
CEEECCHHHHHCEEEEECCCEEEEEEEECCCCEEECCCCCEEEEECCCCCCEEECCCCCC
KIGNINLYCAVIVKKVDKKTLDKTELNKLLRAIKY
CCCCCEEEEEEEHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438; 9688822 [H]