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The map label for this gene is himA

Identifier: 116515025

GI number: 116515025

Start: 92161

End: 92475

Strand: Direct

Name: himA

Synonym: BCc_084

Alternate gene names: 116515025

Gene position: 92161-92475 (Clockwise)

Preceding gene: 116515024

Following gene: 116515028

Centisome position: 22.13

GC content: 24.44

Gene sequence:

>315_bases
ATGGTATTAACTAAAGCTGAAATTTCAGATTATTTATTTCATAAATTAGAATTAAGCAAACAAAATATTAAAGATTTAGT
AGAAATTTTTTTTGAAGAAGTTCGAAAATCATTAGAATTAGGAGAATCTGTTAAATTATCAGGTTTTGGAAATTTTTATC
TACGAGATAAAAAACAAAGACCAGGTAGAAATCCTAAAACTGGAGAATATATTCCTATTTCTGCACGTAGAGTAGTTGTT
TTTAAACCAGGTCAAAAATTAAGAAGTAGGGTAGAATCTTTTAAAGATATTAAAAAAGAAAAAGATATTGTTTAA

Upstream 100 bases:

>100_bases
ACAATCTATGTTAAAAGAATCTGATATTAATATAAATATTCTTCAATGTATTTCTGCATTAAAAGATAAATTTGGAGCTA
TTTTAAGAGAGTAAATTACT

Downstream 100 bases:

>100_bases
TCTATTTAAAAATAAGAATAAATATTTTTTTAAAAATAAAGAAACATTTTTTTAAGAAAAGATTTTTAAATATTTTAGTT
ATTAAATAATATTAATTATG

Product: hypothetical protein

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MVLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRPGRNPKTGEYIPISARRVVV
FKPGQKLRSRVESFKDIKKEKDIV

Sequences:

>Translated_104_residues
MVLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRPGRNPKTGEYIPISARRVVV
FKPGQKLRSRVESFKDIKKEKDIV
>Mature_104_residues
MVLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRPGRNPKTGEYIPISARRVVV
FKPGQKLRSRVESFKDIKKEKDIV

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=93, Percent_Identity=75.2688172043011, Blast_Score=147, Evalue=2e-37,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=37.0786516853933, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787141, Length=93, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_BUCCC (Q057Y8)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802654.1
- ProteinModelPortal:   Q057Y8
- SMR:   Q057Y8
- STRING:   Q057Y8
- EnsemblBacteria:   EBBUCT00000001261
- GeneID:   4440629
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_084
- eggNOG:   COG0776
- GeneTree:   EBGT00050000007762
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- BioCyc:   BAPH372461:BCC_084-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 12159; Mature: 12159

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQR
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCC
PGRNPKTGEYIPISARRVVVFKPGQKLRSRVESFKDIKKEKDIV
CCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQR
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCC
PGRNPKTGEYIPISARRVVVFKPGQKLRSRVESFKDIKKEKDIV
CCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA