| Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
|---|---|
| Accession | NC_008513 |
| Length | 416,380 |
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The map label for this gene is pheT [H]
Identifier: 116515024
GI number: 116515024
Start: 89764
End: 92154
Strand: Direct
Name: pheT [H]
Synonym: BCc_083
Alternate gene names: 116515024
Gene position: 89764-92154 (Clockwise)
Preceding gene: 116515023
Following gene: 116515025
Centisome position: 21.56
GC content: 18.07
Gene sequence:
>2391_bases ATGAAGTTTGGAGAAGAATGGTTACGTGAATGGATTAATCCATCTATTTCAGTTCCGGATTTATGTGAACAGTTAACAAA TTTTGGTTGTGAAGTAGAATATTTTAAAAAAAAATATAAAACTATTTCTAGTGTAGTTATAGGTCAAATTATTTCAAAAG AAAAATATTTTTTAAATAAAAAATTTTTAATATATAATATACTTATTAATAAAAATAAAAAAATTTATGTTGTATATTTT AAAAAAAAATATTTATCTATAGGAAATAAAATACCTATTATTTTAGGTAAAAATTGTATTAAGAAAAATATAAAAAACTT ATCATTAAATAATATAAATAATAATTTTTGTCATCATTTTGGTTCATATCATTTATTAGATATTCAAAAAAATAATCATA AAATAATAGTTTTATCAAAATATGTTACCGTAGGTTTAAATTTTAATGATTTTTTTTATAAAAATGATTATTTAATGAAA TTTTTTGTTCCTTTTAATCGTATTGATTTACGTTCTTTATGGGGTTTATCAAGAGAAATAGCGATATTAAATAAATTAAA AATACCTAAATTAATACGTATAGATAATATACAAAATAAAAAAAAAAAACAAATAAATTGTAATATTAATATTGAAAATA TTCCTATACAATATTTTTTTTGTGAATTATATAAAATAAATTTAGATTCAATTTTACCTTTTAAAATGCAAATAAGATTA CTTCAATCAAATTTATTGACAGATAATATCATAGAAAATATTATTAATTATATTTTTATTGAAACTGGATATTGGTTTCA TGTTTTTGATTTAGATCATATATCTAAAAATTTATATATTAAAAGTATTAAAAAAAAAACATATATTTTTGATACAAATA AAAAAAAATTTTTTTTAAGAAAAGGAACAATAATATTAACAGATTTAAAAAATATTTTATCATTTGAAGATATGGAATAT TCCTGTTATTCAAGGATTAGTAGTACTACTAAAAATTTATTTTTAGGTTCAATTTGTTTTTGTCCAAATTTTATTCAAAA AAGAAATTTATTAATTCCATTTTTTTCTAGAAAAATAGAGTATTCTAAATATAATTTTTATCCTAAAATACAAAAGAATA TATTTAAATATATACAAAAATTGATATTAAATATATGTGGTGGAAGATCTTCAAATATTAAAAAATATAATTTAATAAAA AATTTTATTATTACTAATAAAATATTTTTTACTATTAGAAAATTAAATAAAATTTCTGGAATTATTTTTTTAAAAAAAGA TATAATTACTATTTTAAAATCATGTTATTTTTCATATATAGAAAATAATGATTCATTTTATGTCACTCCTCCATATTGGC GTCTTGATATTCAGATTGAAGAAGATGTAATTAGTGAAATTATTAGAATGTATGGTTACGAAAAAATTAAATCTTGTCCA CCTCAAGAACATATCAATAGTAATATTTCTAATAAAAAATCTGAAGAAATGTCTTTATCTAGAATTAAATTTTTTCTTAT TGATCAAGGATATAATGAAATTATATCATATAGTTTTGTAAATTTAAAAATGCAAAGATCTTTTATATCTAAAAATCATT TTATAAAAATTCAAAATCCTATATCAAATGATATGTCAATTATGAGAACATCTCTATGGATTGGATTATTGCAATGTATT TCATATCATCAAAATCGTCAATATGAATCAATTCGTGTTTTTGAATTTGGTTTGTGTTTTTATTTAAAAAATAAAAATAA ATTTTCGATTATTCAAGATGAATATTTATCTGCAGCGATTAGTGGTTTTTCTAATCGTAGAGAGTGGTATTATAGAAAAA GAAAATTTGATTTTTATGATTTAAAAGGTGATGTTGAATCAATTTTAAATATTTTAGGAAAATTTGATAATATTGAATTT GTTTCTGAAAAATTTTTAGGATTATGTTTAGGAAAAAGTGCAGGAATTTATTTACACGGTGAATTAATTGGTTTTTTAGA TAGTTCATTGCATCGTTTATTTAATTTAAAAAATTCAGTTATTTTATTTGAAATTAAATGGAAAAAAATTTGTAGTCATC AAATTAAAAAAATTAAATCTATATCTACTCTTCCAATTAGTAAAAGAGATATTTCTATTATTATTTCTGATAAAATTATT GTTAAAGACATAATTGATTTATGTAATAAAAATATTTATATTAAAAATTCTGAAATATATGTATATGATATTTATACAGG ATCTAATGTTCCATCTGGAAAAAAAAGCATATCAATTTGTTTTCTTTTTAATAGTTTACAATCTATGTTAAAAGAATCTG ATATTAATATAAATATTCTTCAATGTATTTCTGCATTAAAAGATAAATTTGGAGCTATTTTAAGAGAGTAA
Upstream 100 bases:
>100_bases AAGAATAGCTATGTTAAAATATTCTGTATCTGACATTCGTTATTTTTTTGAAAATGATATACGATTTTTACAACAATTTT CTTAACAACAGGAATATTTA
Downstream 100 bases:
>100_bases ATTACTATGGTATTAACTAAAGCTGAAATTTCAGATTATTTATTTCATAAATTAGAATTAAGCAAACAAAATATTAAAGA TTTAGTAGAAATTTTTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 796; Mature: 796
Protein sequence:
>796_residues MKFGEEWLREWINPSISVPDLCEQLTNFGCEVEYFKKKYKTISSVVIGQIISKEKYFLNKKFLIYNILINKNKKIYVVYF KKKYLSIGNKIPIILGKNCIKKNIKNLSLNNINNNFCHHFGSYHLLDIQKNNHKIIVLSKYVTVGLNFNDFFYKNDYLMK FFVPFNRIDLRSLWGLSREIAILNKLKIPKLIRIDNIQNKKKKQINCNINIENIPIQYFFCELYKINLDSILPFKMQIRL LQSNLLTDNIIENIINYIFIETGYWFHVFDLDHISKNLYIKSIKKKTYIFDTNKKKFFLRKGTIILTDLKNILSFEDMEY SCYSRISSTTKNLFLGSICFCPNFIQKRNLLIPFFSRKIEYSKYNFYPKIQKNIFKYIQKLILNICGGRSSNIKKYNLIK NFIITNKIFFTIRKLNKISGIIFLKKDIITILKSCYFSYIENNDSFYVTPPYWRLDIQIEEDVISEIIRMYGYEKIKSCP PQEHINSNISNKKSEEMSLSRIKFFLIDQGYNEIISYSFVNLKMQRSFISKNHFIKIQNPISNDMSIMRTSLWIGLLQCI SYHQNRQYESIRVFEFGLCFYLKNKNKFSIIQDEYLSAAISGFSNRREWYYRKRKFDFYDLKGDVESILNILGKFDNIEF VSEKFLGLCLGKSAGIYLHGELIGFLDSSLHRLFNLKNSVILFEIKWKKICSHQIKKIKSISTLPISKRDISIIISDKII VKDIIDLCNKNIYIKNSEIYVYDIYTGSNVPSGKKSISICFLFNSLQSMLKESDININILQCISALKDKFGAILRE
Sequences:
>Translated_796_residues MKFGEEWLREWINPSISVPDLCEQLTNFGCEVEYFKKKYKTISSVVIGQIISKEKYFLNKKFLIYNILINKNKKIYVVYF KKKYLSIGNKIPIILGKNCIKKNIKNLSLNNINNNFCHHFGSYHLLDIQKNNHKIIVLSKYVTVGLNFNDFFYKNDYLMK FFVPFNRIDLRSLWGLSREIAILNKLKIPKLIRIDNIQNKKKKQINCNINIENIPIQYFFCELYKINLDSILPFKMQIRL LQSNLLTDNIIENIINYIFIETGYWFHVFDLDHISKNLYIKSIKKKTYIFDTNKKKFFLRKGTIILTDLKNILSFEDMEY SCYSRISSTTKNLFLGSICFCPNFIQKRNLLIPFFSRKIEYSKYNFYPKIQKNIFKYIQKLILNICGGRSSNIKKYNLIK NFIITNKIFFTIRKLNKISGIIFLKKDIITILKSCYFSYIENNDSFYVTPPYWRLDIQIEEDVISEIIRMYGYEKIKSCP PQEHINSNISNKKSEEMSLSRIKFFLIDQGYNEIISYSFVNLKMQRSFISKNHFIKIQNPISNDMSIMRTSLWIGLLQCI SYHQNRQYESIRVFEFGLCFYLKNKNKFSIIQDEYLSAAISGFSNRREWYYRKRKFDFYDLKGDVESILNILGKFDNIEF VSEKFLGLCLGKSAGIYLHGELIGFLDSSLHRLFNLKNSVILFEIKWKKICSHQIKKIKSISTLPISKRDISIIISDKII VKDIIDLCNKNIYIKNSEIYVYDIYTGSNVPSGKKSISICFLFNSLQSMLKESDININILQCISALKDKFGAILRE >Mature_796_residues MKFGEEWLREWINPSISVPDLCEQLTNFGCEVEYFKKKYKTISSVVIGQIISKEKYFLNKKFLIYNILINKNKKIYVVYF KKKYLSIGNKIPIILGKNCIKKNIKNLSLNNINNNFCHHFGSYHLLDIQKNNHKIIVLSKYVTVGLNFNDFFYKNDYLMK FFVPFNRIDLRSLWGLSREIAILNKLKIPKLIRIDNIQNKKKKQINCNINIENIPIQYFFCELYKINLDSILPFKMQIRL LQSNLLTDNIIENIINYIFIETGYWFHVFDLDHISKNLYIKSIKKKTYIFDTNKKKFFLRKGTIILTDLKNILSFEDMEY SCYSRISSTTKNLFLGSICFCPNFIQKRNLLIPFFSRKIEYSKYNFYPKIQKNIFKYIQKLILNICGGRSSNIKKYNLIK NFIITNKIFFTIRKLNKISGIIFLKKDIITILKSCYFSYIENNDSFYVTPPYWRLDIQIEEDVISEIIRMYGYEKIKSCP PQEHINSNISNKKSEEMSLSRIKFFLIDQGYNEIISYSFVNLKMQRSFISKNHFIKIQNPISNDMSIMRTSLWIGLLQCI SYHQNRQYESIRVFEFGLCFYLKNKNKFSIIQDEYLSAAISGFSNRREWYYRKRKFDFYDLKGDVESILNILGKFDNIEF VSEKFLGLCLGKSAGIYLHGELIGFLDSSLHRLFNLKNSVILFEIKWKKICSHQIKKIKSISTLPISKRDISIIISDKII VKDIIDLCNKNIYIKNSEIYVYDIYTGSNVPSGKKSISICFLFNSLQSMLKESDININILQCISALKDKFGAILRE
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=813, Percent_Identity=27.060270602706, Blast_Score=381, Evalue=1e-107,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 94234; Mature: 94234
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFGEEWLREWINPSISVPDLCEQLTNFGCEVEYFKKKYKTISSVVIGQIISKEKYFLNK CCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC KFLIYNILINKNKKIYVVYFKKKYLSIGNKIPIILGKNCIKKNIKNLSLNNINNNFCHHF EEEEEEEEECCCCEEEEEEEEEEHHCCCCEEEEEECCHHHHHHHCCCEECCCCCHHHHHC GSYHLLDIQKNNHKIIVLSKYVTVGLNFNDFFYKNDYLMKFFVPFNRIDLRSLWGLSREI CCEEEEEEECCCCEEEEEEEEEEEECCCCCEEEECCEEEEEEECCCCCCHHHHHCCCHHH AILNKLKIPKLIRIDNIQNKKKKQINCNINIENIPIQYFFCELYKINLDSILPFKMQIRL HHHHHCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHH LQSNLLTDNIIENIINYIFIETGYWFHVFDLDHISKNLYIKSIKKKTYIFDTNKKKFFLR HHHHCCHHHHHHHHHHEEEEECCCEEEEEEHHHCCCCCEEEEECCEEEEEECCCCEEEEE KGTIILTDLKNILSFEDMEYSCYSRISSTTKNLFLGSICFCPNFIQKRNLLIPFFSRKIE CCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEHHCEEE YSKYNFYPKIQKNIFKYIQKLILNICGGRSSNIKKYNLIKNFIITNKIFFTIRKLNKISG CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCE IIFLKKDIITILKSCYFSYIENNDSFYVTPPYWRLDIQIEEDVISEIIRMYGYEKIKSCP EEEEHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEEECHHHHHHHHHHHCCHHHHCCC PQEHINSNISNKKSEEMSLSRIKFFLIDQGYNEIISYSFVNLKMQRSFISKNHFIKIQNP CHHHHCCCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHEEEEEHHHHHCCCCEEEECCC ISNDMSIMRTSLWIGLLQCISYHQNRQYESIRVFEFGLCFYLKNKNKFSIIQDEYLSAAI CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEEHHHHHHHHH SGFSNRREWYYRKRKFDFYDLKGDVESILNILGKFDNIEFVSEKFLGLCLGKSAGIYLHG HCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEH ELIGFLDSSLHRLFNLKNSVILFEIKWKKICSHQIKKIKSISTLPISKRDISIIISDKII HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHH VKDIIDLCNKNIYIKNSEIYVYDIYTGSNVPSGKKSISICFLFNSLQSMLKESDININIL HHHHHHHHCCCEEEECCEEEEEEEEECCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHH QCISALKDKFGAILRE HHHHHHHHHHHHHHCC >Mature Secondary Structure MKFGEEWLREWINPSISVPDLCEQLTNFGCEVEYFKKKYKTISSVVIGQIISKEKYFLNK CCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC KFLIYNILINKNKKIYVVYFKKKYLSIGNKIPIILGKNCIKKNIKNLSLNNINNNFCHHF EEEEEEEEECCCCEEEEEEEEEEHHCCCCEEEEEECCHHHHHHHCCCEECCCCCHHHHHC GSYHLLDIQKNNHKIIVLSKYVTVGLNFNDFFYKNDYLMKFFVPFNRIDLRSLWGLSREI CCEEEEEEECCCCEEEEEEEEEEEECCCCCEEEECCEEEEEEECCCCCCHHHHHCCCHHH AILNKLKIPKLIRIDNIQNKKKKQINCNINIENIPIQYFFCELYKINLDSILPFKMQIRL HHHHHCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHH LQSNLLTDNIIENIINYIFIETGYWFHVFDLDHISKNLYIKSIKKKTYIFDTNKKKFFLR HHHHCCHHHHHHHHHHEEEEECCCEEEEEEHHHCCCCCEEEEECCEEEEEECCCCEEEEE KGTIILTDLKNILSFEDMEYSCYSRISSTTKNLFLGSICFCPNFIQKRNLLIPFFSRKIE CCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEHHCEEE YSKYNFYPKIQKNIFKYIQKLILNICGGRSSNIKKYNLIKNFIITNKIFFTIRKLNKISG CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCE IIFLKKDIITILKSCYFSYIENNDSFYVTPPYWRLDIQIEEDVISEIIRMYGYEKIKSCP EEEEHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEEECHHHHHHHHHHHCCHHHHCCC PQEHINSNISNKKSEEMSLSRIKFFLIDQGYNEIISYSFVNLKMQRSFISKNHFIKIQNP CHHHHCCCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHEEEEEHHHHHCCCCEEEECCC ISNDMSIMRTSLWIGLLQCISYHQNRQYESIRVFEFGLCFYLKNKNKFSIIQDEYLSAAI CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEEHHHHHHHHH SGFSNRREWYYRKRKFDFYDLKGDVESILNILGKFDNIEFVSEKFLGLCLGKSAGIYLHG HCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEH ELIGFLDSSLHRLFNLKNSVILFEIKWKKICSHQIKKIKSISTLPISKRDISIIISDKII HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHH VKDIIDLCNKNIYIKNSEIYVYDIYTGSNVPSGKKSISICFLFNSLQSMLKESDININIL HHHHHHHHCCCEEEECCEEEEEEEEECCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHH QCISALKDKFGAILRE HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]