Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
---|---|
Accession | NC_008513 |
Length | 416,380 |
Click here to switch to the map view.
The map label for this gene is hisB [H]
Identifier: 116515008
GI number: 116515008
Start: 73488
End: 74555
Strand: Direct
Name: hisB [H]
Synonym: BCc_066
Alternate gene names: 116515008
Gene position: 73488-74555 (Clockwise)
Preceding gene: 116515007
Following gene: 116515009
Centisome position: 17.65
GC content: 22.47
Gene sequence:
>1068_bases ATGAAAAAAAAATTTTTATTTATTGATCGTGATGGTACTTTAATTAAAGAGCCTAAAAAAACATTTCAAATTGATTCTTT AAACAAATTTTTTTTAGAAAGAAATGTTATTTCATCTCTTTTAAAATTAATTCATTTAGACTATCAATTAGTTATGATTA CTAATCAGGATGGATTAGGTAGTTCGTCTTTTCCAATTAGTAAATTTAGTAAAATACAAAATTTAATGTTAAATATTTTT TCTTCTGAAAATATTTTTTTTAAAACTATTTTAATTTGCCCACATTTTCTTAATAATTATTGTAACTGTAGAAAACCAAA TATTTCTTTAGTTCAAAATTTAATAAATGATATTGAATTTGATAAGAAAAATAGTTATGTAATTGGAGATAGAGATACTG ATATACAACTAGCTAAAAATATAGGAATTAAAAGTTTTTTGTATCATTCAAAATATTTTACTTGGAAAGATATTGTTAAA AAATTGACTTACCCTAATCGTATATCAGAAATTTCAAGAAATACATTAGAAACAAAAATATTTGTTAAAATAAGTTTAGA TTTCCCCATTAAGAATTATATTTTTACTGGAATTAATTTTTTAAATCATATGCTTGATCAAATTAGAATACATAGTGGAA TTTTTATGTATATTAATGTTATTGGAGATTTATCAATTGATGATCATCATACAATAGAAGATCTTGGAATAACACTAGGT TTAGCTTTAAAAAAAGCTATTGGAAATAAAATTGGTATTGCAAGATATGGTTTTACTTTACCTATGGATGAAAGTATTTG TTCTTGTATTATTGATTTATCCGGTCGTTCATTTTTATCTTTTTATACAAACTTTAAATATAAATATATTGGTGATTTGA ATGCATGTATGATTGAGCATTTTTTTTATTCTTTAAGTCAATCTATGAAAGCTACAATTCATTTACACGCTACTGGAAAA AATGATCATCATTGTGCAGAAAGTTTATTTAAAGCATTTGGACGTGCTTTAAAACAAGCTATTTTTTTAGAAGGAACTAT TTTACCGACATCAAAAGGTTTATTTTAA
Upstream 100 bases:
>100_bases AACTTAGGTTTAAAAAATTGTTTAAGAATATCTATAGGCACCATTCATGAATGTCAAGAATTAATTAATGTTTTATCTAT ATATAAAGGAAAAATATAAG
Downstream 100 bases:
>100_bases ATGTCTATTGTAATTATTAATACTGGTTGTTCTAATCTTTTTTCACTGTATAGTTCTATTAAAAGATTAGGTTATAATGT TAATGTTACTGATTCAATAT
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MKKKFLFIDRDGTLIKEPKKTFQIDSLNKFFLERNVISSLLKLIHLDYQLVMITNQDGLGSSSFPISKFSKIQNLMLNIF SSENIFFKTILICPHFLNNYCNCRKPNISLVQNLINDIEFDKKNSYVIGDRDTDIQLAKNIGIKSFLYHSKYFTWKDIVK KLTYPNRISEISRNTLETKIFVKISLDFPIKNYIFTGINFLNHMLDQIRIHSGIFMYINVIGDLSIDDHHTIEDLGITLG LALKKAIGNKIGIARYGFTLPMDESICSCIIDLSGRSFLSFYTNFKYKYIGDLNACMIEHFFYSLSQSMKATIHLHATGK NDHHCAESLFKAFGRALKQAIFLEGTILPTSKGLF
Sequences:
>Translated_355_residues MKKKFLFIDRDGTLIKEPKKTFQIDSLNKFFLERNVISSLLKLIHLDYQLVMITNQDGLGSSSFPISKFSKIQNLMLNIF SSENIFFKTILICPHFLNNYCNCRKPNISLVQNLINDIEFDKKNSYVIGDRDTDIQLAKNIGIKSFLYHSKYFTWKDIVK KLTYPNRISEISRNTLETKIFVKISLDFPIKNYIFTGINFLNHMLDQIRIHSGIFMYINVIGDLSIDDHHTIEDLGITLG LALKKAIGNKIGIARYGFTLPMDESICSCIIDLSGRSFLSFYTNFKYKYIGDLNACMIEHFFYSLSQSMKATIHLHATGK NDHHCAESLFKAFGRALKQAIFLEGTILPTSKGLF >Mature_355_residues MKKKFLFIDRDGTLIKEPKKTFQIDSLNKFFLERNVISSLLKLIHLDYQLVMITNQDGLGSSSFPISKFSKIQNLMLNIF SSENIFFKTILICPHFLNNYCNCRKPNISLVQNLINDIEFDKKNSYVIGDRDTDIQLAKNIGIKSFLYHSKYFTWKDIVK KLTYPNRISEISRNTLETKIFVKISLDFPIKNYIFTGINFLNHMLDQIRIHSGIFMYINVIGDLSIDDHHTIEDLGITLG LALKKAIGNKIGIARYGFTLPMDESICSCIIDLSGRSFLSFYTNFKYKYIGDLNACMIEHFFYSLSQSMKATIHLHATGK NDHHCAESLFKAFGRALKQAIFLEGTILPTSKGLF
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=355, Percent_Identity=53.2394366197183, Blast_Score=398, Evalue=1e-112, Organism=Escherichia coli, GI1786399, Length=158, Percent_Identity=27.2151898734177, Blast_Score=73, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324776, Length=212, Percent_Identity=37.7358490566038, Blast_Score=140, Evalue=3e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR013954 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD; PF08645 PNK3P [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 40832; Mature: 40832
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKFLFIDRDGTLIKEPKKTFQIDSLNKFFLERNVISSLLKLIHLDYQLVMITNQDGLG CCCEEEEEECCCCEECCCHHHEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC SSSFPISKFSKIQNLMLNIFSSENIFFKTILICPHFLNNYCNCRKPNISLVQNLINDIEF CCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC DKKNSYVIGDRDTDIQLAKNIGIKSFLYHSKYFTWKDIVKKLTYPNRISEISRNTLETKI CCCCCEEECCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEE FVKISLDFPIKNYIFTGINFLNHMLDQIRIHSGIFMYINVIGDLSIDDHHTIEDLGITLG EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHH LALKKAIGNKIGIARYGFTLPMDESICSCIIDLSGRSFLSFYTNFKYKYIGDLNACMIEH HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCEEEECCHHHHHHHH FFYSLSQSMKATIHLHATGKNDHHCAESLFKAFGRALKQAIFLEGTILPTSKGLF HHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCC >Mature Secondary Structure MKKKFLFIDRDGTLIKEPKKTFQIDSLNKFFLERNVISSLLKLIHLDYQLVMITNQDGLG CCCEEEEEECCCCEECCCHHHEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC SSSFPISKFSKIQNLMLNIFSSENIFFKTILICPHFLNNYCNCRKPNISLVQNLINDIEF CCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC DKKNSYVIGDRDTDIQLAKNIGIKSFLYHSKYFTWKDIVKKLTYPNRISEISRNTLETKI CCCCCEEECCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEE FVKISLDFPIKNYIFTGINFLNHMLDQIRIHSGIFMYINVIGDLSIDDHHTIEDLGITLG EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHH LALKKAIGNKIGIARYGFTLPMDESICSCIIDLSGRSFLSFYTNFKYKYIGDLNACMIEH HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCEEEECCHHHHHHHH FFYSLSQSMKATIHLHATGKNDHHCAESLFKAFGRALKQAIFLEGTILPTSKGLF HHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9767718; 12089438 [H]