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The map label for this gene is ycbZ [H]

Identifier: 116332584

GI number: 116332584

Start: 178425

End: 180047

Strand: Direct

Name: ycbZ [H]

Synonym: LBJ_4156

Alternate gene names: 116332584

Gene position: 178425-180047 (Clockwise)

Preceding gene: 116332583

Following gene: 116332585

Centisome position: 59.52

GC content: 43.13

Gene sequence:

>1623_bases
GTGATTAAAAGAATAACGTCCAATCAATCGGCAATCAAACTACATGCAGGCAAACAAAGATCCAAAAATGGCCTGCCCGA
TTTTTTAGCATTTCACAGGGAAGAACTTAGCTCCTTACCGAGAGCTTTGGAAAATCCGGGAATTTTCTCAAACATTCTCA
TTACGGGCCCGGGATTAGAATCCAATCTTACCTTGCTCCAGGAATATATTTCAGACTTAAAAAAAAATACCAAAGTCATC
TGCGATCCTCATCCCGGATTTCTGACGCTTGCGGGATTTCCAGGAAACACGGAATATCGTCCCGGTAAAATGGCCGAAGC
CGACGGGGGTTATCTTTTACTTCCAATGAGAGCGCTTACAGAAGATCCCAATCTATATTTTCTCGTAAAAGAAGTATTAC
AAACCGGAAAGATAGATTTTCTCACTCTTCCCGAAATGACCGGATCTAAAGAAATGAATCGTTTTCATCCTTCGGTCAAT
ACCCGTTTTCGGCTCATTCTCGCGGGAGAAGAAGGAGAAGTAGATTTTATTTCCGGAGTTGATCCCGATTTTTACGATAG
CTTTTCCTTTAAGATTCATCTTCCATACGAAGCGGTGATGAAGACAAAAAAAAATCTTCAACTTTTCGGCGGCCTAATCC
ATTCCTGGGAAAAGCCGGGATATCCGAGCTTCGATTCTTCCGCCGTGGACACGTTACTCGAAATCGGACTTAGATGGAAC
GACAGCAAAACGAGACTTTCCTTATCCTTCGCGGAACTTAGAACCTTTGTGGGCGAACTTCTCGTACTATACAAAAAGGA
AAAAAAACCAATTACGAGAAGCCAGGTCGAATCCGCAGTCGAATTGGTGGAAAAAAGAATCGCGGTCTATAAAAGAAGAT
ATTTGGAAAGTGTGAGAGAAGGTCTGATCACGATCCAGCTCAAAGGGAAAAAAACGGGAAGGATCAACGGACTCTCCGTC
ATCTTACTGCATTCTTCCTTATCCGACTTTGGACAGGTGAATCAAGTTTCCGCACGGGTCGCTCTCGGTTCGGGAAACTT
CATCAATATAGAAAGAGAAGTGAATCTTTCCGGAGACCTGCACGATAAGGGAGTTTTTATATTACAATCTTATATTAAAG
GAATGTTCTCTCATATACAATCCTTCGGCTTGGATGCCTCGATACTTTTCGAGCAAAATTACTCGCCGATCGACGGAGAC
TCGGCAAGTTGCGCCGAACTTCTTGCGATACTTTCCGCTCTTGGCGGCCTTGAAATTCCTTGCAATATTGCGGTCACAGG
GGCGCTTTCCCAATATGGGGAAATTCTTCCGGTCGGCTCCGTAAACACTAAAATCGCCGCTTGGTACGAGGTGACTCAGA
TCGTCGGAAATTCTAGAGACAAATATACGGTTTATATTCCTACGGCGAATTTGCGTGATTTAAATCTGCCTTCTTCCATC
CGCAAAGCAATGGACAAAGGAAAATTTCAGATTTTTACCTGTTCTCACGTAGAGGAACTGATCCCGGAAGTTTTTGGAAT
TCCGGCTGGAAAATTCGGCAAAAACGGAAAATATCCACAAGGAAGCTTGTTCCATTTAATTGAGGAGAGAATCGATCGAA
AAAAAGAAGAAGAACACGAATAA

Upstream 100 bases:

>100_bases
TGATTGAACGGACCCATCCATACTTCTTCGAGAATCGATATGATGTTTCGTCAAATTAATATATTGATCATACAAGGAAC
CCGACGGAGAATCGTTTTTA

Downstream 100 bases:

>100_bases
GAAATCGAAGTCACGAAAGTAATGCGACAAAATATTAGAAAAAATTTCTTTCCGAAGTGTTTAGAATCTTTCAAACTGGA
AAAAGAAAATGAGGATTCGT

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIKRITSNQSAIKLHAGKQRSKNGLPDFLAFHREELSSLPRALENPGIFSNILITGPGLESNLTLLQEYISDLKKNTKVI
CDPHPGFLTLAGFPGNTEYRPGKMAEADGGYLLLPMRALTEDPNLYFLVKEVLQTGKIDFLTLPEMTGSKEMNRFHPSVN
TRFRLILAGEEGEVDFISGVDPDFYDSFSFKIHLPYEAVMKTKKNLQLFGGLIHSWEKPGYPSFDSSAVDTLLEIGLRWN
DSKTRLSLSFAELRTFVGELLVLYKKEKKPITRSQVESAVELVEKRIAVYKRRYLESVREGLITIQLKGKKTGRINGLSV
ILLHSSLSDFGQVNQVSARVALGSGNFINIEREVNLSGDLHDKGVFILQSYIKGMFSHIQSFGLDASILFEQNYSPIDGD
SASCAELLAILSALGGLEIPCNIAVTGALSQYGEILPVGSVNTKIAAWYEVTQIVGNSRDKYTVYIPTANLRDLNLPSSI
RKAMDKGKFQIFTCSHVEELIPEVFGIPAGKFGKNGKYPQGSLFHLIEERIDRKKEEEHE

Sequences:

>Translated_540_residues
MIKRITSNQSAIKLHAGKQRSKNGLPDFLAFHREELSSLPRALENPGIFSNILITGPGLESNLTLLQEYISDLKKNTKVI
CDPHPGFLTLAGFPGNTEYRPGKMAEADGGYLLLPMRALTEDPNLYFLVKEVLQTGKIDFLTLPEMTGSKEMNRFHPSVN
TRFRLILAGEEGEVDFISGVDPDFYDSFSFKIHLPYEAVMKTKKNLQLFGGLIHSWEKPGYPSFDSSAVDTLLEIGLRWN
DSKTRLSLSFAELRTFVGELLVLYKKEKKPITRSQVESAVELVEKRIAVYKRRYLESVREGLITIQLKGKKTGRINGLSV
ILLHSSLSDFGQVNQVSARVALGSGNFINIEREVNLSGDLHDKGVFILQSYIKGMFSHIQSFGLDASILFEQNYSPIDGD
SASCAELLAILSALGGLEIPCNIAVTGALSQYGEILPVGSVNTKIAAWYEVTQIVGNSRDKYTVYIPTANLRDLNLPSSI
RKAMDKGKFQIFTCSHVEELIPEVFGIPAGKFGKNGKYPQGSLFHLIEERIDRKKEEEHE
>Mature_540_residues
MIKRITSNQSAIKLHAGKQRSKNGLPDFLAFHREELSSLPRALENPGIFSNILITGPGLESNLTLLQEYISDLKKNTKVI
CDPHPGFLTLAGFPGNTEYRPGKMAEADGGYLLLPMRALTEDPNLYFLVKEVLQTGKIDFLTLPEMTGSKEMNRFHPSVN
TRFRLILAGEEGEVDFISGVDPDFYDSFSFKIHLPYEAVMKTKKNLQLFGGLIHSWEKPGYPSFDSSAVDTLLEIGLRWN
DSKTRLSLSFAELRTFVGELLVLYKKEKKPITRSQVESAVELVEKRIAVYKRRYLESVREGLITIQLKGKKTGRINGLSV
ILLHSSLSDFGQVNQVSARVALGSGNFINIEREVNLSGDLHDKGVFILQSYIKGMFSHIQSFGLDASILFEQNYSPIDGD
SASCAELLAILSALGGLEIPCNIAVTGALSQYGEILPVGSVNTKIAAWYEVTQIVGNSRDKYTVYIPTANLRDLNLPSSI
RKAMDKGKFQIFTCSHVEELIPEVFGIPAGKFGKNGKYPQGSLFHLIEERIDRKKEEEHE

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=455, Percent_Identity=28.1318681318681, Blast_Score=189, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 60172; Mature: 60172

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRITSNQSAIKLHAGKQRSKNGLPDFLAFHREELSSLPRALENPGIFSNILITGPGLE
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
SNLTLLQEYISDLKKNTKVICDPHPGFLTLAGFPGNTEYRPGKMAEADGGYLLLPMRALT
CHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHC
EDPNLYFLVKEVLQTGKIDFLTLPEMTGSKEMNRFHPSVNTRFRLILAGEEGEVDFISGV
CCCCEEHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEEECCC
DPDFYDSFSFKIHLPYEAVMKTKKNLQLFGGLIHSWEKPGYPSFDSSAVDTLLEIGLRWN
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
DSKTRLSLSFAELRTFVGELLVLYKKEKKPITRSQVESAVELVEKRIAVYKRRYLESVRE
CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLITIQLKGKKTGRINGLSVILLHSSLSDFGQVNQVSARVALGSGNFINIEREVNLSGDL
CEEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHEEEEEECCCCEEEEEEEECCCCCC
HDKGVFILQSYIKGMFSHIQSFGLDASILFEQNYSPIDGDSASCAELLAILSALGGLEIP
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCC
CNIAVTGALSQYGEILPVGSVNTKIAAWYEVTQIVGNSRDKYTVYIPTANLRDLNLPSSI
CCEEEECCHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHH
RKAMDKGKFQIFTCSHVEELIPEVFGIPAGKFGKNGKYPQGSLFHLIEERIDRKKEEEHE
HHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKRITSNQSAIKLHAGKQRSKNGLPDFLAFHREELSSLPRALENPGIFSNILITGPGLE
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
SNLTLLQEYISDLKKNTKVICDPHPGFLTLAGFPGNTEYRPGKMAEADGGYLLLPMRALT
CHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHC
EDPNLYFLVKEVLQTGKIDFLTLPEMTGSKEMNRFHPSVNTRFRLILAGEEGEVDFISGV
CCCCEEHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEEECCC
DPDFYDSFSFKIHLPYEAVMKTKKNLQLFGGLIHSWEKPGYPSFDSSAVDTLLEIGLRWN
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
DSKTRLSLSFAELRTFVGELLVLYKKEKKPITRSQVESAVELVEKRIAVYKRRYLESVRE
CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLITIQLKGKKTGRINGLSVILLHSSLSDFGQVNQVSARVALGSGNFINIEREVNLSGDL
CEEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHEEEEEECCCCEEEEEEEECCCCCC
HDKGVFILQSYIKGMFSHIQSFGLDASILFEQNYSPIDGDSASCAELLAILSALGGLEIP
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCC
CNIAVTGALSQYGEILPVGSVNTKIAAWYEVTQIVGNSRDKYTVYIPTANLRDLNLPSSI
CCEEEECCHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHH
RKAMDKGKFQIFTCSHVEELIPEVFGIPAGKFGKNGKYPQGSLFHLIEERIDRKKEEEHE
HHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]