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The map label for this gene is rfbC [H]

Identifier: 116327945

GI number: 116327945

Start: 1451885

End: 1453645

Strand: Direct

Name: rfbC [H]

Synonym: LBL_1234

Alternate gene names: 116327945

Gene position: 1451885-1453645 (Clockwise)

Preceding gene: 116327944

Following gene: 116327946

Centisome position: 40.17

GC content: 35.38

Gene sequence:

>1761_bases
ATGAAGGCCTTCGTAAGGAAGATTCTCTATTGGCTGAGGCAGTATCAATATTACTTTTTCCTCTATTCGTGGGATAAGAA
TATTTATAAATCAGAATATTATTATGAACCTTTAATTAGCATACTTGTGCCCGTTTACAACACCAAAAGAGGATATCTAG
AAAAAATGGTTCGCTCCGTTGAGATGCAAACTTATAAAAACTGGGAATTAATTCTTCTTGATGATGCCTCTCCGGATGAA
AGTCCCGGGAATTATCTGAAAGAACGATGTGAAACAGATTCTCGAATTCGATATTTTCGTTCGGATAAAAATGAAGGAAT
CAGTTTAGCGACTCGGAAAGCGTTTGAATGCTCCGCGGGGGAATACGTGGCATTTTTAGATCACGATGATCGTTTATCAA
AAAACGCGTTATTGATCGTATTGGAAGCTCTCCAAGAAGAAAAAAATAGACCTGAGTTACTTTATTCCGATGAAATTTTT
CAATCAAAAATTCCGGGAGTTTTTTCACTTTCTACAAAACCGGAATTCTCGCCCGAAAGATTGATATCTTATAATTATAT
CTGTCATTTTGTGATAGTTTCAAAAAACTTAATCTATCGAATGGGAGGTATTCGGAAAGGTTTCGACGGAAGCCAGGATC
ATGAATTTGTACTTCGCGCGTGTAGACATACCGATCGTATTATAAGACTTCCATATTTTTTATACGTATGGCGTCTTCAT
GGGGAAAGTTTTTCAAAACAAAGGGCGCAGATCTGCGAAGAAAGCTCTAAAAAAGCTATATTAGAATATTATAAAAATAA
AAAGGATCCGGTGGAAGAAATCGTTCCAGGGTATTATCCGTTTACCTATCATCCGATCCGTAGGTTGAAGCCAAACAAAT
TGATTTCGATTGTTGTTCTCGATATAGAGGCTATACTAGGGAATGGATTTCAAGATATTTATGAAATGATTAGATTGACT
CCTTCCGATTTTCACTTAGAAATTTTTCTAAGCGTTGGAAATAATCGGACGAAGTTTGAAATCCCTCAGTCTGTTTTGAA
AAAATTTCAAGGTCGAGTTCTATTTAAAATACTTGAGTTTTTTGAGCCAAATCTTTCCGCAAAAAATATCAATTCAATTG
TTTCTGATACACAAGGTTCTTACGTTTTATTTTGGAATCCTTGTTTTAAACCGAAGAATGAGAATTGGCTGTATGAGTTG
CTACAACATGCGCAATCTTCGGAAATAGGCGCAGTTTGTCCGATTATTTTCAATCAGAAAAATGAACTCATTTATTCTTC
TTTGCTTCTCGGAAAAAAAGGATTCATTGGTGTTGCGGGTAATAAGGTTAGGGTAGAAGAAGCTAAAATTTGGTCTGGAG
AATTTATCGAGAAGAACGTTTCTGTAATTTCGCGTAATGTGTTTTTGGTATCTAGAAAGAATTGGGATTTATTAAAGGGA
CTTGATGAATCTTTTCAAAACGATTATTGGGACGTGGATTTTTCTCTAAGACTCCTTGAGGAAAATTTTAGGATCGTAAG
TAATCCTTTCTCAAGTTTTGTCTCTTCTTATACACTTAAGAGATCTTTTCAAGAATATGATCCTAAATATAAAGTTGGTA
GATCGGATCGAAAATTACTAATTGGAAAATGGGGAAGCTCATTGGAATCCGACAGATTTTATTCTCCTCATAGCGACTTA
TTAGGATCTGATATGTATCCTAGAAATTTTTTTCATAGTTTGCAGTATAGGGTTTGCAGAAGGAAATGGGACCTGAGCTG
A

Upstream 100 bases:

>100_bases
ATTTGAAATGTATCAAATGTGATGTTCAAAGAACGAAATCGCTTTAGGTTTAAAAGCATTTTGTTGATCTATATCGTATT
GCAGTGTTGAAGAGGTTTGA

Downstream 100 bases:

>100_bases
GAAAGTGAATGTAAAAAAATCGATTTAAAAAAACTTTATGTTTTACACCAAAACTTAGAATTTCCAAAGAAATCGTCGGA
AGTAAATTCATATTTTTTGT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 586

Protein sequence:

>586_residues
MKAFVRKILYWLRQYQYYFFLYSWDKNIYKSEYYYEPLISILVPVYNTKRGYLEKMVRSVEMQTYKNWELILLDDASPDE
SPGNYLKERCETDSRIRYFRSDKNEGISLATRKAFECSAGEYVAFLDHDDRLSKNALLIVLEALQEEKNRPELLYSDEIF
QSKIPGVFSLSTKPEFSPERLISYNYICHFVIVSKNLIYRMGGIRKGFDGSQDHEFVLRACRHTDRIIRLPYFLYVWRLH
GESFSKQRAQICEESSKKAILEYYKNKKDPVEEIVPGYYPFTYHPIRRLKPNKLISIVVLDIEAILGNGFQDIYEMIRLT
PSDFHLEIFLSVGNNRTKFEIPQSVLKKFQGRVLFKILEFFEPNLSAKNINSIVSDTQGSYVLFWNPCFKPKNENWLYEL
LQHAQSSEIGAVCPIIFNQKNELIYSSLLLGKKGFIGVAGNKVRVEEAKIWSGEFIEKNVSVISRNVFLVSRKNWDLLKG
LDESFQNDYWDVDFSLRLLEENFRIVSNPFSSFVSSYTLKRSFQEYDPKYKVGRSDRKLLIGKWGSSLESDRFYSPHSDL
LGSDMYPRNFFHSLQYRVCRRKWDLS

Sequences:

>Translated_586_residues
MKAFVRKILYWLRQYQYYFFLYSWDKNIYKSEYYYEPLISILVPVYNTKRGYLEKMVRSVEMQTYKNWELILLDDASPDE
SPGNYLKERCETDSRIRYFRSDKNEGISLATRKAFECSAGEYVAFLDHDDRLSKNALLIVLEALQEEKNRPELLYSDEIF
QSKIPGVFSLSTKPEFSPERLISYNYICHFVIVSKNLIYRMGGIRKGFDGSQDHEFVLRACRHTDRIIRLPYFLYVWRLH
GESFSKQRAQICEESSKKAILEYYKNKKDPVEEIVPGYYPFTYHPIRRLKPNKLISIVVLDIEAILGNGFQDIYEMIRLT
PSDFHLEIFLSVGNNRTKFEIPQSVLKKFQGRVLFKILEFFEPNLSAKNINSIVSDTQGSYVLFWNPCFKPKNENWLYEL
LQHAQSSEIGAVCPIIFNQKNELIYSSLLLGKKGFIGVAGNKVRVEEAKIWSGEFIEKNVSVISRNVFLVSRKNWDLLKG
LDESFQNDYWDVDFSLRLLEENFRIVSNPFSSFVSSYTLKRSFQEYDPKYKVGRSDRKLLIGKWGSSLESDRFYSPHSDL
LGSDMYPRNFFHSLQYRVCRRKWDLS
>Mature_586_residues
MKAFVRKILYWLRQYQYYFFLYSWDKNIYKSEYYYEPLISILVPVYNTKRGYLEKMVRSVEMQTYKNWELILLDDASPDE
SPGNYLKERCETDSRIRYFRSDKNEGISLATRKAFECSAGEYVAFLDHDDRLSKNALLIVLEALQEEKNRPELLYSDEIF
QSKIPGVFSLSTKPEFSPERLISYNYICHFVIVSKNLIYRMGGIRKGFDGSQDHEFVLRACRHTDRIIRLPYFLYVWRLH
GESFSKQRAQICEESSKKAILEYYKNKKDPVEEIVPGYYPFTYHPIRRLKPNKLISIVVLDIEAILGNGFQDIYEMIRLT
PSDFHLEIFLSVGNNRTKFEIPQSVLKKFQGRVLFKILEFFEPNLSAKNINSIVSDTQGSYVLFWNPCFKPKNENWLYEL
LQHAQSSEIGAVCPIIFNQKNELIYSSLLLGKKGFIGVAGNKVRVEEAKIWSGEFIEKNVSVISRNVFLVSRKNWDLLKG
LDESFQNDYWDVDFSLRLLEENFRIVSNPFSSFVSSYTLKRSFQEYDPKYKVGRSDRKLLIGKWGSSLESDRFYSPHSDL
LGSDMYPRNFFHSLQYRVCRRKWDLS

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788372, Length=283, Percent_Identity=24.7349823321555, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 69226; Mature: 69226

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFVRKILYWLRQYQYYFFLYSWDKNIYKSEYYYEPLISILVPVYNTKRGYLEKMVRSV
CHHHHHHHHHHHHHCEEEEEEEEECCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EMQTYKNWELILLDDASPDESPGNYLKERCETDSRIRYFRSDKNEGISLATRKAFECSAG
HHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCHHCCCCC
EYVAFLDHDDRLSKNALLIVLEALQEEKNRPELLYSDEIFQSKIPGVFSLSTKPEFSPER
CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHCCCEEEECCCCCCCHHH
LISYNYICHFVIVSKNLIYRMGGIRKGFDGSQDHEFVLRACRHTDRIIRLPYFLYVWRLH
HHHHHHHEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEECCHHHEEEECC
GESFSKQRAQICEESSKKAILEYYKNKKDPVEEIVPGYYPFTYHPIRRLKPNKLISIVVL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCEEEEEEE
DIEAILGNGFQDIYEMIRLTPSDFHLEIFLSVGNNRTKFEIPQSVLKKFQGRVLFKILEF
EHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHH
FEPNLSAKNINSIVSDTQGSYVLFWNPCFKPKNENWLYELLQHAQSSEIGAVCPIIFNQK
HCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEECCEEECCC
NELIYSSLLLGKKGFIGVAGNKVRVEEAKIWSGEFIEKNVSVISRNVFLVSRKNWDLLKG
CHHHHHHHHHCCCCCEEECCCEEEEEHHHCCCCHHHHHHHHHHCCCEEEEECCCCHHHHH
LDESFQNDYWDVDFSLRLLEENFRIVSNPFSSFVSSYTLKRSFQEYDPKYKVGRSDRKLL
HHHHHCCCCCCCCHHHEEHHHCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
IGKWGSSLESDRFYSPHSDLLGSDMYPRNFFHSLQYRVCRRKWDLS
EECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAFVRKILYWLRQYQYYFFLYSWDKNIYKSEYYYEPLISILVPVYNTKRGYLEKMVRSV
CHHHHHHHHHHHHHCEEEEEEEEECCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EMQTYKNWELILLDDASPDESPGNYLKERCETDSRIRYFRSDKNEGISLATRKAFECSAG
HHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCHHCCCCC
EYVAFLDHDDRLSKNALLIVLEALQEEKNRPELLYSDEIFQSKIPGVFSLSTKPEFSPER
CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHCCCEEEECCCCCCCHHH
LISYNYICHFVIVSKNLIYRMGGIRKGFDGSQDHEFVLRACRHTDRIIRLPYFLYVWRLH
HHHHHHHEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEECCHHHEEEECC
GESFSKQRAQICEESSKKAILEYYKNKKDPVEEIVPGYYPFTYHPIRRLKPNKLISIVVL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCEEEEEEE
DIEAILGNGFQDIYEMIRLTPSDFHLEIFLSVGNNRTKFEIPQSVLKKFQGRVLFKILEF
EHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHH
FEPNLSAKNINSIVSDTQGSYVLFWNPCFKPKNENWLYELLQHAQSSEIGAVCPIIFNQK
HCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEECCEEECCC
NELIYSSLLLGKKGFIGVAGNKVRVEEAKIWSGEFIEKNVSVISRNVFLVSRKNWDLLKG
CHHHHHHHHHCCCCCEEECCCEEEEEHHHCCCCHHHHHHHHHHCCCEEEEECCCCHHHHH
LDESFQNDYWDVDFSLRLLEENFRIVSNPFSSFVSSYTLKRSFQEYDPKYKVGRSDRKLL
HHHHHCCCCCCCCHHHEEHHHCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
IGKWGSSLESDRFYSPHSDLLGSDMYPRNFFHSLQYRVCRRKWDLS
EECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]