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The map label for this gene is yibD [C]

Identifier: 116327730

GI number: 116327730

Start: 1146649

End: 1147545

Strand: Direct

Name: yibD [C]

Synonym: LBL_0983

Alternate gene names: 116327730

Gene position: 1146649-1147545 (Clockwise)

Preceding gene: 116327729

Following gene: 116327733

Centisome position: 31.72

GC content: 39.58

Gene sequence:

>897_bases
ATGAATACAGTTTCCGTCGTAATTCCGACTTTCAATCGGGAAGATAAAGTTATCAAGGCGATTTCTTCCGTTTTGGCACA
GACTTTTCAACCTAAGGAAATCATCGTAGTCGACGACGGATCGACTGATTCAACGATTTTCAAAATTCAAGAAACTTTTC
CAAATTCTTTCGATGGAATCCGAATACTTTCTTTGGAACATAAAGGAGTCAGTCACGCTAGAAATCGGGGAGTGGAAAAG
GCCGCGGGGGATTGGATTGCATTTTTGGATTCTGACGATGAATGGCTGCCCGAAAAATTGGAACGTCAATGGAAGTATTG
TGAAAAACATCCGGAAACGGAAATTATTCAATCCCAAGAGATTTGGATTCGAAATGGAAAACGAGTTAATACCCCAGTTC
ATCTTTCGAAAAAAAACGGATGGATCTTCGAACAAAGCCTTGAGTTTTGTAGCGTTACCCCTTCTTCGGTTCTTTTGAAA
AAGGATCTCTATGAAAATCTAGGGGGAATGGACGAAAAACTTCCCGCCTGCGAGGATTACGATTTTTGGTTGAGAATCAC
CTCTAAAACTCCGGTTGTTCTTTTGAACGAGTTTTTACTCGTCCGATACGGAGGACATAAGGATCAACTTTCCGTTCGAT
ATCCGGCTATGGACCGTTTCAGGATTTATTCTATTATAAAATTATTAAATTCTAATTTATTAAACGAATGGCAGAGAAAT
TGCGCTGAAAAAATTCTCTCCGTTAAGTGGGGAATTTTGAGGCAAGGTAGGATAAAAAGGAACTCTTGGAACGAAGAGTT
TGATTTTCTTTTACGCTCCGTAACCAAAGACGGATTAGCTTCTTCCTCCGGAATCCGTATTCAGCAATTTTTACTTGAGA
ACAAAAATTGGACTTGA

Upstream 100 bases:

>100_bases
GAAGGCCTTTGGATCCGGAACCTAGAAAAATTTGCTCTCAAATACGGATTCGAAAAAAAACTGCAAAGGAAGTTCTAAAA
AAACGTTTTAAAAAAAGGTC

Downstream 100 bases:

>100_bases
GGTTCGATTTTACGCAATGAAACGTCCGGAAAGTCTAAACAAATCGACTTATATAAAAATTTGCGAAGTTAGGGAGCCCG
TTTCGAAAGTTATATCTAAT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNTVSVVIPTFNREDKVIKAISSVLAQTFQPKEIIVVDDGSTDSTIFKIQETFPNSFDGIRILSLEHKGVSHARNRGVEK
AAGDWIAFLDSDDEWLPEKLERQWKYCEKHPETEIIQSQEIWIRNGKRVNTPVHLSKKNGWIFEQSLEFCSVTPSSVLLK
KDLYENLGGMDEKLPACEDYDFWLRITSKTPVVLLNEFLLVRYGGHKDQLSVRYPAMDRFRIYSIIKLLNSNLLNEWQRN
CAEKILSVKWGILRQGRIKRNSWNEEFDFLLRSVTKDGLASSSGIRIQQFLLENKNWT

Sequences:

>Translated_298_residues
MNTVSVVIPTFNREDKVIKAISSVLAQTFQPKEIIVVDDGSTDSTIFKIQETFPNSFDGIRILSLEHKGVSHARNRGVEK
AAGDWIAFLDSDDEWLPEKLERQWKYCEKHPETEIIQSQEIWIRNGKRVNTPVHLSKKNGWIFEQSLEFCSVTPSSVLLK
KDLYENLGGMDEKLPACEDYDFWLRITSKTPVVLLNEFLLVRYGGHKDQLSVRYPAMDRFRIYSIIKLLNSNLLNEWQRN
CAEKILSVKWGILRQGRIKRNSWNEEFDFLLRSVTKDGLASSSGIRIQQFLLENKNWT
>Mature_298_residues
MNTVSVVIPTFNREDKVIKAISSVLAQTFQPKEIIVVDDGSTDSTIFKIQETFPNSFDGIRILSLEHKGVSHARNRGVEK
AAGDWIAFLDSDDEWLPEKLERQWKYCEKHPETEIIQSQEIWIRNGKRVNTPVHLSKKNGWIFEQSLEFCSVTPSSVLLK
KDLYENLGGMDEKLPACEDYDFWLRITSKTPVVLLNEFLLVRYGGHKDQLSVRYPAMDRFRIYSIIKLLNSNLLNEWQRN
CAEKILSVKWGILRQGRIKRNSWNEEFDFLLRSVTKDGLASSSGIRIQQFLLENKNWT

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=100, Percent_Identity=39, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788372, Length=100, Percent_Identity=34, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 34598; Mature: 34598

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVSVVIPTFNREDKVIKAISSVLAQTFQPKEIIVVDDGSTDSTIFKIQETFPNSFDGI
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHCCCCCCCE
RILSLEHKGVSHARNRGVEKAAGDWIAFLDSDDEWLPEKLERQWKYCEKHPETEIIQSQE
EEEEEECCCHHHHHHCCCCHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCCCC
IWIRNGKRVNTPVHLSKKNGWIFEQSLEFCSVTPSSVLLKKDLYENLGGMDEKLPACEDY
EEEECCCEECCCEEEECCCCEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFWLRITSKTPVVLLNEFLLVRYGGHKDQLSVRYPAMDRFRIYSIIKLLNSNLLNEWQRN
CEEEEECCCCCHHHHHHEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
CAEKILSVKWGILRQGRIKRNSWNEEFDFLLRSVTKDGLASSSGIRIQQFLLENKNWT
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MNTVSVVIPTFNREDKVIKAISSVLAQTFQPKEIIVVDDGSTDSTIFKIQETFPNSFDGI
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHCCCCCCCE
RILSLEHKGVSHARNRGVEKAAGDWIAFLDSDDEWLPEKLERQWKYCEKHPETEIIQSQE
EEEEEECCCHHHHHHCCCCHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCCCC
IWIRNGKRVNTPVHLSKKNGWIFEQSLEFCSVTPSSVLLKKDLYENLGGMDEKLPACEDY
EEEECCCEECCCEEEECCCCEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFWLRITSKTPVVLLNEFLLVRYGGHKDQLSVRYPAMDRFRIYSIIKLLNSNLLNEWQRN
CEEEEECCCCCHHHHHHEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
CAEKILSVKWGILRQGRIKRNSWNEEFDFLLRSVTKDGLASSSGIRIQQFLLENKNWT
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]