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The map label for this gene is nusB

Identifier: 116327424

GI number: 116327424

Start: 706022

End: 706438

Strand: Direct

Name: nusB

Synonym: LBL_0634

Alternate gene names: 116327424

Gene position: 706022-706438 (Clockwise)

Preceding gene: 116327423

Following gene: 116327425

Centisome position: 19.53

GC content: 42.69

Gene sequence:

>417_bases
ATGTCGGCCAGACGTACTTCTAGAGAAATCGCCGTAATGGCTCTTTACCAATTGGAACTAACGGGACCTCCGCTCAAAGA
GGTTCTCAAGTTCAAATGGTATGACAAAAAAACCGAACCGGAGGAAAGAGATTTTGCCGTTTCCATCGTAAATGGTGTTG
TGAAAAATCAGGAACAAATCGATACTCTAATCAAGAAGTATTCCAAAAACTGGGACTTCTCAAGAATCAGCATCGTAAAC
AAAGCGATTCTTCGTTTATCCGTATTCGCTTTGTTGTATAGCTGGGAAGTTCCGAAGAATGTTACGATTGACGAAGCGGT
GGAACTTACGAAAGAATTTGAAAGCGAAGAGTCCGCCCGGTTCGTGAACGGAATCCTGGACGCAATTCTCAAAAACGAAA
CCAAATCCGATGGATAA

Upstream 100 bases:

>100_bases
TGAACAAGCGATCGAAAGAGCGGGAACCAAAGCCGGGAACAAAGGTGCCGAAGCCGCAGCCACGGCGGTGGAAATGGTGA
ACCTACTTTCTCTTCTTTAA

Downstream 100 bases:

>100_bases
AGAAATCCGAAAAAACAGGTTGTTCTTAGAGGGAATCGAGGAGAAAGAACTTTATTTTCCGGAGGATCAAGAACCGGTTC
GGATTCGTAGGTCATATAAT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVN
KAILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEESARFVNGILDAILKNETKSDG

Sequences:

>Translated_138_residues
MSARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVN
KAILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEESARFVNGILDAILKNETKSDG
>Mature_137_residues
SARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVNK
AILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEESARFVNGILDAILKNETKSDG

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=123, Percent_Identity=34.9593495934959, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_LEPBJ (Q04Q78)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_801700.1
- ProteinModelPortal:   Q04Q78
- SMR:   Q04Q78
- STRING:   Q04Q78
- GeneID:   4412115
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_2505
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- PhylomeDB:   Q04Q78
- ProtClustDB:   PRK00202
- BioCyc:   LBOR355277:LBJ_2505-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15902; Mature: 15771

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQI
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHH
DTLIKKYSKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEESAR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
FVNGILDAILKNETKSDG
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQI
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHH
DTLIKKYSKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEESAR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
FVNGILDAILKNETKSDG
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA