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The map label for this gene is ygbL [C]

Identifier: 116249284

GI number: 116249284

Start: 673280

End: 673954

Strand: Direct

Name: ygbL [C]

Synonym: pRL120619

Alternate gene names: 116249284

Gene position: 673280-673954 (Clockwise)

Preceding gene: 116249283

Following gene: 116249285

Centisome position: 77.39

GC content: 65.63

Gene sequence:

>675_bases
ATGTCCGACGCGCGCCTGCGTGAGGAAATCTGCCGATACGGCCGCTCGCTGTTCGAACGCGGGCTGACGCCCGGTTCGTC
GGGCAACATATCGTTGCGGCTGGAGGATGGCGGCTGGCTGGTCACGCCGACCAACGCCTCGCTCGGCTTTCTCGACCCGG
CACGGATCTCCAGGCTCGATGCCGAAGGCCGGCTTCTGTCCGGCGACAAGCCGACCAAGGAAATTCCGCTGCATACGGCC
CTTTACGATACGCGCGGCAGCGCCCGCGCCATCGTCCATCTTCACTCCACCCACGCGGTGGCACTGACCATGCTGCCGGA
GATCGATCCGCGCGCCGCCCTGCCGCCGATGACGCCATATTATCTGATGCGCGCCGGCGAAACCGCGCTGGTGCCCTATT
ATCGTCCGGGCGATCCGGCGGTGGCCGATGCCATCCGCGGGCTGGCGGGCAAGTATTCGTCGGTGCTGCTGGCCAATCAC
GGACCTGTTGTCGCCGGCGACAGCCTGGAGGCGGCGGTCTTTGCGACCGAGGAACTGGAGGAAACGGCGAAGCTCTATCT
GCTGTTGCGCAACCTCAATCCCCGTTTCCTCAGCCCGGCGCAGGTGGCCGATCTCGTCAACACGTTCGGCCTCGACCTTC
CGTCGCATCACGATCACGATCACGGCGGCGATTGA

Upstream 100 bases:

>100_bases
CGCCGCGCAGCTGATCGTCGCCAATGCACCGCCGCAGGCCGTCGATCTCGGCTTTGAACTGATCGAAGGGGCAACCGCCT
AATATATTGGAGGAACTGTC

Downstream 100 bases:

>100_bases
AGGCGTCACTCCGCCGGCCGTTGACCGCGGGCAAGCGCGCAACCTTCTGCCAAACCCTGCTTTCGATACGATAGATTCTG
CTTCCGATGCCGCCAATTCA

Product: putative aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSDARLREEICRYGRSLFERGLTPGSSGNISLRLEDGGWLVTPTNASLGFLDPARISRLDAEGRLLSGDKPTKEIPLHTA
LYDTRGSARAIVHLHSTHAVALTMLPEIDPRAALPPMTPYYLMRAGETALVPYYRPGDPAVADAIRGLAGKYSSVLLANH
GPVVAGDSLEAAVFATEELEETAKLYLLLRNLNPRFLSPAQVADLVNTFGLDLPSHHDHDHGGD

Sequences:

>Translated_224_residues
MSDARLREEICRYGRSLFERGLTPGSSGNISLRLEDGGWLVTPTNASLGFLDPARISRLDAEGRLLSGDKPTKEIPLHTA
LYDTRGSARAIVHLHSTHAVALTMLPEIDPRAALPPMTPYYLMRAGETALVPYYRPGDPAVADAIRGLAGKYSSVLLANH
GPVVAGDSLEAAVFATEELEETAKLYLLLRNLNPRFLSPAQVADLVNTFGLDLPSHHDHDHGGD
>Mature_223_residues
SDARLREEICRYGRSLFERGLTPGSSGNISLRLEDGGWLVTPTNASLGFLDPARISRLDAEGRLLSGDKPTKEIPLHTAL
YDTRGSARAIVHLHSTHAVALTMLPEIDPRAALPPMTPYYLMRAGETALVPYYRPGDPAVADAIRGLAGKYSSVLLANHG
PVVAGDSLEAAVFATEELEETAKLYLLLRNLNPRFLSPAQVADLVNTFGLDLPSHHDHDHGGD

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789094, Length=203, Percent_Identity=49.2610837438424, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1789164, Length=189, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: NA

Molecular weight: Translated: 24243; Mature: 24112

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDARLREEICRYGRSLFERGLTPGSSGNISLRLEDGGWLVTPTNASLGFLDPARISRLD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHCC
AEGRLLSGDKPTKEIPLHTALYDTRGSARAIVHLHSTHAVALTMLPEIDPRAALPPMTPY
CCCCEECCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCHH
YLMRAGETALVPYYRPGDPAVADAIRGLAGKYSSVLLANHGPVVAGDSLEAAVFATEELE
HEEECCCEEEECEECCCCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEEEEEHHHHH
ETAKLYLLLRNLNPRFLSPAQVADLVNTFGLDLPSHHDHDHGGD
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDARLREEICRYGRSLFERGLTPGSSGNISLRLEDGGWLVTPTNASLGFLDPARISRLD
CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHCC
AEGRLLSGDKPTKEIPLHTALYDTRGSARAIVHLHSTHAVALTMLPEIDPRAALPPMTPY
CCCCEECCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCHH
YLMRAGETALVPYYRPGDPAVADAIRGLAGKYSSVLLANHGPVVAGDSLEAAVFATEELE
HEEECCCEEEECEECCCCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEEEEEHHHHH
ETAKLYLLLRNLNPRFLSPAQVADLVNTFGLDLPSHHDHDHGGD
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]