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The map label for this gene is yphD [H]

Identifier: 116248955

GI number: 116248955

Start: 303831

End: 304778

Strand: Direct

Name: yphD [H]

Synonym: pRL120286

Alternate gene names: 116248955

Gene position: 303831-304778 (Clockwise)

Preceding gene: 116248954

Following gene: 116248956

Centisome position: 34.92

GC content: 66.67

Gene sequence:

>948_bases
ATGACGTTCCGGCTGTCGTCCGACGCCCTGCGTCTTGCCATTCCTGCCTTGTCGCTGACGCTGCTGCTCGCCGCCGTCTT
CTGGCTGCAGCCGCGCGCCATGAGCTATGTCGGGCTCAACCTGCTGTTCAACCTGGCTGTGCCGATCGCGCTTGCGACGA
TCGCCCAGATGATCGTGATGGCGGTGAACGATCTCGATTTGTCGATGGGCGCCTTCGTCAGCTTCGTCGCCTGCGTCACC
GCGACCTTTCTGCGGGATGCTCCGGTGATCGGCGTGCTGATCCTTGCCGGCGCGATCGCAACTTATGCGGGCCTCGGCGT
CGTCATCTATCTGCGCAACCTGCCGTCCATTGTCGTGACCCTCGGCATGAGCTTCGTCTGGGGCGGCCTTGCCGTTCTGC
TGCTGCCGGCACCGGGCGGGCAGGCGCCGGACTGGGTGCGCTGGCTGATGACCGTCAAGCCGCCGCTGGCGCCGATGGCG
ATCGTCGCCAGCATCGTCATCGCCTTGGTCGCCCATCTTCTCGTCATGCGGTCGTCGCTCGGCGTGCTGATGCGCGGCAT
CGGCGGCAACCAACGCTCGGTCGAGCGCGCCGGCTGGTCGATTGTCGGGGCGCGCGCTTCCGCCTATGGTCTTGCCGGCC
TCTTTGCCGTGCTCGCCGGCATCGCCCTCGTCGGCCTGACGACCTCGGCCGATGCCAATATCGCGTTGCGCTACACGCTG
CTGTCGATCGCCGGCGTGATCCTCGGCGGCGGCGAGTTCATCGGCGGCCGCGTCTCCCCGATCGGCGCCGTCATCGGTGC
GCTGACGCTGACGCTTGCCGGCTCGTTCCTGTCCTTCCTGCGGATCTCGCCGGATTGGCAGATCGGGGCTCAGGGTGCGA
TCCTGATCATCGTGCTGGCACTTCGGCTGATGCTGAACCGCCTGGAGAAGCGGGAGAAACGCCGATGA

Upstream 100 bases:

>100_bases
GCGTCTACGTCTTCCGCGAAGGCCGCATCACCACCGAACTCGCCGGTGATGCCGTCAACGAGACGAGTATCATCGCCGCC
TCCTTCGAGGGGGCCGCTGC

Downstream 100 bases:

>100_bases
CCCCGCTCTTTCGCCTATTCCGCAAACCCTGGATCTGGTCGTGGCTTGCCGCCTTTGTCGTCTGGTTCCTGACGATCATG
GTGACGCTCGGCGCCAGCGC

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTFRLSSDALRLAIPALSLTLLLAAVFWLQPRAMSYVGLNLLFNLAVPIALATIAQMIVMAVNDLDLSMGAFVSFVACVT
ATFLRDAPVIGVLILAGAIATYAGLGVVIYLRNLPSIVVTLGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMA
IVASIVIALVAHLLVMRSSLGVLMRGIGGNQRSVERAGWSIVGARASAYGLAGLFAVLAGIALVGLTTSADANIALRYTL
LSIAGVILGGGEFIGGRVSPIGAVIGALTLTLAGSFLSFLRISPDWQIGAQGAILIIVLALRLMLNRLEKREKRR

Sequences:

>Translated_315_residues
MTFRLSSDALRLAIPALSLTLLLAAVFWLQPRAMSYVGLNLLFNLAVPIALATIAQMIVMAVNDLDLSMGAFVSFVACVT
ATFLRDAPVIGVLILAGAIATYAGLGVVIYLRNLPSIVVTLGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMA
IVASIVIALVAHLLVMRSSLGVLMRGIGGNQRSVERAGWSIVGARASAYGLAGLFAVLAGIALVGLTTSADANIALRYTL
LSIAGVILGGGEFIGGRVSPIGAVIGALTLTLAGSFLSFLRISPDWQIGAQGAILIIVLALRLMLNRLEKREKRR
>Mature_314_residues
TFRLSSDALRLAIPALSLTLLLAAVFWLQPRAMSYVGLNLLFNLAVPIALATIAQMIVMAVNDLDLSMGAFVSFVACVTA
TFLRDAPVIGVLILAGAIATYAGLGVVIYLRNLPSIVVTLGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMAI
VASIVIALVAHLLVMRSSLGVLMRGIGGNQRSVERAGWSIVGARASAYGLAGLFAVLAGIALVGLTTSADANIALRYTLL
SIAGVILGGGEFIGGRVSPIGAVIGALTLTLAGSFLSFLRISPDWQIGAQGAILIIVLALRLMLNRLEKREKRR

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=294, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=26.537216828479, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32964; Mature: 32833

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRLSSDALRLAIPALSLTLLLAAVFWLQPRAMSYVGLNLLFNLAVPIALATIAQMIVM
CEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVNDLDLSMGAFVSFVACVTATFLRDAPVIGVLILAGAIATYAGLGVVIYLRNLPSIVVT
HHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMAIVASIVIALVAHLLVMRSSL
HHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GVLMRGIGGNQRSVERAGWSIVGARASAYGLAGLFAVLAGIALVGLTTSADANIALRYTL
HHHHHCCCCCCHHHHHCCCHHEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LSIAGVILGGGEFIGGRVSPIGAVIGALTLTLAGSFLSFLRISPDWQIGAQGAILIIVLA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LRLMLNRLEKREKRR
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFRLSSDALRLAIPALSLTLLLAAVFWLQPRAMSYVGLNLLFNLAVPIALATIAQMIVM
EEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]