Click here to switch to the map view.

The map label for this gene is rbsC [C]

Identifier: 116248956

GI number: 116248956

Start: 304775

End: 305725

Strand: Direct

Name: rbsC [C]

Synonym: pRL120287

Alternate gene names: 116248956

Gene position: 304775-305725 (Clockwise)

Preceding gene: 116248955

Following gene: 116248957

Centisome position: 35.03

GC content: 63.62

Gene sequence:

>951_bases
ATGACCCCGCTCTTTCGCCTATTCCGCAAACCCTGGATCTGGTCGTGGCTTGCCGCCTTTGTCGTCTGGTTCCTGACGAT
CATGGTGACGCTCGGCGCCAGCGCGCTTGGCCTGTCGCAGGCAGCCCTCACCTTCGCGGCCTTCTCGGTCATCGTCGGCA
TCGGCCAGATGTTCGTCATCACGCTCGGCCCCGGCAACATCGATCTGTCGGTTCCCGCCACCATGACGCTTGCCGGCACG
GTGGCGCTGAAGCTGATGAATGTCGAAAACGGCATGATCCTGCCCGGCCTTCTCGTTGCCATCGTCATCGGCCTTGTCGT
CGGCCTCGGCAATTATGCACTCATCAAGGCGCTGCGCATTCCGCCGATCATCGCCACGCTGTCCATGAGCTTCATCGTGC
AGTCCGCCGCGATCTGGACGAACCGGGGCTTGCGCATCAAGCCTCCGAGCGTGCTGGCGGAATTCACCACGTCGAGCACG
CTCGGCGTGCCGAACGTTGCGATCGTGGCACTCCTCATCTCGCTCCTTGCCTGGTTCCTGCTCGAGAAGACGATCTACGG
ACGCTGGATCTCGGCGATCGGCCAGAGCATGCCGGCTGCGCGCATGGCCGGCATACCGGTCGACGGCACGCGTTTCGTCA
CCTATCTCTTCTGCGCCGTGCTCGCATCGGTCGCAGGCTATCTGCTCGCCTGTTTCTCGGGCGGGGCGGCGCTCAACATG
GGCTCGGAATATCTGCTGATGTCGATCGCTGTCGTCGTGATCGGCGGCACGGCGGTGGCCGGCGGCGATTCCAACGTGCC
GGGCATCTGGGGCGCGTCGCTCTTCATGTTCCTGGTCGTCTCCATGCTCAACACTTACGGGCTCGGCGCGGGCATCCGCC
TGATCATGACCGGCCTCATCATCATCAGCGTCATCATGCTCGCCGGCGGTCGCCGAGCTGGCATGCGATAA

Upstream 100 bases:

>100_bases
TCTCGCCGGATTGGCAGATCGGGGCTCAGGGTGCGATCCTGATCATCGTGCTGGCACTTCGGCTGATGCTGAACCGCCTG
GAGAAGCGGGAGAAACGCCG

Downstream 100 bases:

>100_bases
ACGGAAAGACCGCCATGGCCGAGGCCAGCATCTACGAAATCCACGACCCGCGCTTCCGGCAGATGATCGTGACGAGCGCC
GGTCTCGACGAACTCTATTC

Product: putative permease component of ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTPLFRLFRKPWIWSWLAAFVVWFLTIMVTLGASALGLSQAALTFAAFSVIVGIGQMFVITLGPGNIDLSVPATMTLAGT
VALKLMNVENGMILPGLLVAIVIGLVVGLGNYALIKALRIPPIIATLSMSFIVQSAAIWTNRGLRIKPPSVLAEFTTSST
LGVPNVAIVALLISLLAWFLLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASVAGYLLACFSGGAALNM
GSEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLIIISVIMLAGGRRAGMR

Sequences:

>Translated_316_residues
MTPLFRLFRKPWIWSWLAAFVVWFLTIMVTLGASALGLSQAALTFAAFSVIVGIGQMFVITLGPGNIDLSVPATMTLAGT
VALKLMNVENGMILPGLLVAIVIGLVVGLGNYALIKALRIPPIIATLSMSFIVQSAAIWTNRGLRIKPPSVLAEFTTSST
LGVPNVAIVALLISLLAWFLLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASVAGYLLACFSGGAALNM
GSEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLIIISVIMLAGGRRAGMR
>Mature_315_residues
TPLFRLFRKPWIWSWLAAFVVWFLTIMVTLGASALGLSQAALTFAAFSVIVGIGQMFVITLGPGNIDLSVPATMTLAGTV
ALKLMNVENGMILPGLLVAIVIGLVVGLGNYALIKALRIPPIIATLSMSFIVQSAAIWTNRGLRIKPPSVLAEFTTSSTL
GVPNVAIVALLISLLAWFLLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASVAGYLLACFSGGAALNMG
SEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLIIISVIMLAGGRRAGMR

Specific function: Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=323, Percent_Identity=26.9349845201238, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=26.813880126183, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790524, Length=260, Percent_Identity=27.3076923076923, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787794, Length=158, Percent_Identity=29.746835443038, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693214, Length=228, Percent_Identity=35.0877192982456, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082395, Length=253, Percent_Identity=29.2490118577075, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33175; Mature: 33043

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLFRLFRKPWIWSWLAAFVVWFLTIMVTLGASALGLSQAALTFAAFSVIVGIGQMFVI
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
TLGPGNIDLSVPATMTLAGTVALKLMNVENGMILPGLLVAIVIGLVVGLGNYALIKALRI
EECCCCEEEECCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
PPIIATLSMSFIVQSAAIWTNRGLRIKPPSVLAEFTTSSTLGVPNVAIVALLISLLAWFL
CHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
LEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASVAGYLLACFSGGAALNM
HHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
GSEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLI
CHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IISVIMLAGGRRAGMR
HHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TPLFRLFRKPWIWSWLAAFVVWFLTIMVTLGASALGLSQAALTFAAFSVIVGIGQMFVI
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
TLGPGNIDLSVPATMTLAGTVALKLMNVENGMILPGLLVAIVIGLVVGLGNYALIKALRI
EECCCCEEEECCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
PPIIATLSMSFIVQSAAIWTNRGLRIKPPSVLAEFTTSSTLGVPNVAIVALLISLLAWFL
CHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
LEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASVAGYLLACFSGGAALNM
HHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
GSEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLI
CHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IISVIMLAGGRRAGMR
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]