Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
---|---|
Accession | NC_008358 |
Length | 3,705,021 |
Click here to switch to the map view.
The map label for this gene is 114800111
Identifier: 114800111
GI number: 114800111
Start: 3438916
End: 3440067
Strand: Reverse
Name: 114800111
Synonym: HNE_3277
Alternate gene names: NA
Gene position: 3440067-3438916 (Counterclockwise)
Preceding gene: 114797081
Following gene: 114797186
Centisome position: 92.85
GC content: 65.19
Gene sequence:
>1152_bases ATGCAAACCACGCTTGCACTGCTTCAGCCGCTTCTTCCCGAGCTCGCCGCCCGCGCGGGAGATATGGAGGCGGCGCGGCG CCTTCCGGCAGACCTTGCGCAAAAGCTTGCCGCTGCCGGTGTTTTCCGGATGGTGACGCCCAGGACCTTTGGCGGACTTG AGCTCAGCCCGCGCGAGATTGTCGAGGTCACCGAAGCGGCCGCCCGCGCCAATGCCAGCGCCGGATGGTGCGTGATGATC GCCGCAACCACGGCGCTCAACGCCGCTTATATGGCGCCCGAATATGCCCGCGAAATCTACGCCGATCCGTTGACAATCAC CGGCGGCGTTTTTGCGCCAATGGGCAAGGCGGTGGTGGAGGGGGATCACTACCGCGTTTCCGGCCGCTGGCAGTGGGGCT CGGGCTCGGCCAATTGCAGCTGGCTCTGCGGGGGTTGCACCGTCTGGGAAGCGGACGAGATGAAGCGGTTGCCCAGCGGC GCGCCCGACACGCGGATGATGGTCTTTCCCGCTTCCGAAGTGACCCTGCATGACACCTGGCATGTGATGGGCCTGAAGGG CACAGGCTCGGGCGACATTGAAGTGAAGGACATTCTGGTGCCGCGCGGGCGCTCGGTATCGCTGGTGGCCGATGCGCCGC GCGAATCCGGGGCGTTGTTCAAATTCCCCGCCTTTGGTCTGCTGGCGCTGGGCGTTTCGGCCGTCGCGCTTGGCAATGCG CGTGGCGCGCTGGACGCGTTTCACGCCCTCGCCACAGTTAAGAAAAGCCAGGGATCATCCAAGACGCTCAGCGAGCGCCA GGCCATGCAGGCAGACTATGCCCGCTGTGAAGCCCAATGGCGCGCCGCGCGGGCTTATCTTTTTGCAGAGATCGACCGTG TCTGGACAATTGCGCAGGGCGATGGCGCCATTCCGATGGAGGCGCGCGCTGATCTGCGCCTGGCGTGTACCCATATGACC CGCACCGGCGCCGACATCTGCCGCACGTTGTATGATCTGGGCGGGGGCGCCGCCCTGTTTGAGGCCAGCGACCTGCAACG CCGCTTCCGCGATGCTCATGCCATCACCCAGCATATCGTCACCGCCCCCTCTACGCTGGAACTGACGGGACGCATTCTCT TTGGGCTGCCGACCGATGGCGCCATGGTGTGA
Upstream 100 bases:
>100_bases TGACGATAGACCCCGCTTCCATGCGCGATATTCGCATCCTTGAAACCATCAAGGAAGGCGTCACCATCTACAGCGCTGAA TTGCCCGAGGACAAATGACC
Downstream 100 bases:
>100_bases GCATTCTGGCGGGAAGCCGGTTTTTGTGGCATCCTGCTGAAAAGTGCGCGGAGGAGACGGGAGGATCTGCCGATGCAAAG CGCCGTGGCGTTTGGAGGGT
Product: putative hydrolase NrgC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MQTTLALLQPLLPELAARAGDMEAARRLPADLAQKLAAAGVFRMVTPRTFGGLELSPREIVEVTEAAARANASAGWCVMI AATTALNAAYMAPEYAREIYADPLTITGGVFAPMGKAVVEGDHYRVSGRWQWGSGSANCSWLCGGCTVWEADEMKRLPSG APDTRMMVFPASEVTLHDTWHVMGLKGTGSGDIEVKDILVPRGRSVSLVADAPRESGALFKFPAFGLLALGVSAVALGNA RGALDAFHALATVKKSQGSSKTLSERQAMQADYARCEAQWRAARAYLFAEIDRVWTIAQGDGAIPMEARADLRLACTHMT RTGADICRTLYDLGGGAALFEASDLQRRFRDAHAITQHIVTAPSTLELTGRILFGLPTDGAMV
Sequences:
>Translated_383_residues MQTTLALLQPLLPELAARAGDMEAARRLPADLAQKLAAAGVFRMVTPRTFGGLELSPREIVEVTEAAARANASAGWCVMI AATTALNAAYMAPEYAREIYADPLTITGGVFAPMGKAVVEGDHYRVSGRWQWGSGSANCSWLCGGCTVWEADEMKRLPSG APDTRMMVFPASEVTLHDTWHVMGLKGTGSGDIEVKDILVPRGRSVSLVADAPRESGALFKFPAFGLLALGVSAVALGNA RGALDAFHALATVKKSQGSSKTLSERQAMQADYARCEAQWRAARAYLFAEIDRVWTIAQGDGAIPMEARADLRLACTHMT RTGADICRTLYDLGGGAALFEASDLQRRFRDAHAITQHIVTAPSTLELTGRILFGLPTDGAMV >Mature_383_residues MQTTLALLQPLLPELAARAGDMEAARRLPADLAQKLAAAGVFRMVTPRTFGGLELSPREIVEVTEAAARANASAGWCVMI AATTALNAAYMAPEYAREIYADPLTITGGVFAPMGKAVVEGDHYRVSGRWQWGSGSANCSWLCGGCTVWEADEMKRLPSG APDTRMMVFPASEVTLHDTWHVMGLKGTGSGDIEVKDILVPRGRSVSLVADAPRESGALFKFPAFGLLALGVSAVALGNA RGALDAFHALATVKKSQGSSKTLSERQAMQADYARCEAQWRAARAYLFAEIDRVWTIAQGDGAIPMEARADLRLACTHMT RTGADICRTLYDLGGGAALFEASDLQRRFRDAHAITQHIVTAPSTLELTGRILFGLPTDGAMV
Specific function: Involved in pigment production acting as an hydroxylase that transforms indole to indoxyl, resulting in the formation of indigo [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013107 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF08028 Acyl-CoA_dh_2 [H]
EC number: NA
Molecular weight: Translated: 40899; Mature: 40899
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTTLALLQPLLPELAARAGDMEAARRLPADLAQKLAAAGVFRMVTPRTFGGLELSPREI CCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH VEVTEAAARANASAGWCVMIAATTALNAAYMAPEYAREIYADPLTITGGVFAPMGKAVVE HHHHHHHHHCCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHCCCEEECCCCHHCCCHHHCC GDHYRVSGRWQWGSGSANCSWLCGGCTVWEADEMKRLPSGAPDTRMMVFPASEVTLHDTW CCEEEEEEEEECCCCCCCCEEEECCCEEECCHHHHHCCCCCCCCEEEEEECCCEEEECCE HVMGLKGTGSGDIEVKDILVPRGRSVSLVADAPRESGALFKFPAFGLLALGVSAVALGNA EEEEECCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHEECCC RGALDAFHALATVKKSQGSSKTLSERQAMQADYARCEAQWRAARAYLFAEIDRVWTIAQG CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHEEEEECC DGAIPMEARADLRLACTHMTRTGADICRTLYDLGGGAALFEASDLQRRFRDAHAITQHIV CCCCCCCCCCCEEEEEEHHHHCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH TAPSTLELTGRILFGLPTDGAMV CCCCEEEEEEEEEEECCCCCCCC >Mature Secondary Structure MQTTLALLQPLLPELAARAGDMEAARRLPADLAQKLAAAGVFRMVTPRTFGGLELSPREI CCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH VEVTEAAARANASAGWCVMIAATTALNAAYMAPEYAREIYADPLTITGGVFAPMGKAVVE HHHHHHHHHCCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHCCCEEECCCCHHCCCHHHCC GDHYRVSGRWQWGSGSANCSWLCGGCTVWEADEMKRLPSGAPDTRMMVFPASEVTLHDTW CCEEEEEEEEECCCCCCCCEEEECCCEEECCHHHHHCCCCCCCCEEEEEECCCEEEECCE HVMGLKGTGSGDIEVKDILVPRGRSVSLVADAPRESGALFKFPAFGLLALGVSAVALGNA EEEEECCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHEECCC RGALDAFHALATVKKSQGSSKTLSERQAMQADYARCEAQWRAARAYLFAEIDRVWTIAQG CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHEEEEECC DGAIPMEARADLRLACTHMTRTGADICRTLYDLGGGAALFEASDLQRRFRDAHAITQHIV CCCCCCCCCCCEEEEEEHHHHCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH TAPSTLELTGRILFGLPTDGAMV CCCCEEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9251216 [H]