Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
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Accession | NC_008358 |
Length | 3,705,021 |
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The map label for this gene is flaA [H]
Identifier: 114799536
GI number: 114799536
Start: 252387
End: 253634
Strand: Direct
Name: flaA [H]
Synonym: HNE_0264
Alternate gene names: 114799536
Gene position: 252387-253634 (Clockwise)
Preceding gene: 114800152
Following gene: 114798597
Centisome position: 6.81
GC content: 58.97
Gene sequence:
>1248_bases ATGTCTAGCATCCTGACTAACAACAGCTCGATGGTTGCGCTCGAGACCCTGCGCAATATCAACCGTAACCTTGAAACCGT TCAGAGCGAAATCTCGACCGGCAAGAAAGTTTCCAACGCCAAGGACAACGCCGCTGTCTGGGCCGTCTCGACTGTGATGT CGAGCGATGTTGCAAGCTTCAAGGCGATCTCCGACTCTCTCAACCTGGGTTCGTCCACGGTTGGCGTCGCCCGTTCGGCG TCGGAAAAAGTTGTCACCACCCTGGAAGAGATCAAGACTCTGATCGTTCAGGCGCAAGGCGAGAACGTTGACCGCGCGAA GTATCAAACGGACATCGAAGAGAAGATCGGCCTGATCGAGGGTTATGTTTCGGCTGCCCAGTTCAACGGTCTCAACCTTC TGGATGGTTCGTCCACGGACGCTGTGAACGTTCTGGCGTCGCTTGACCGCGCCTCGAACGGCACCGTTTCGGCCTCTTAT ATCAGCGTTGATCGTCAGGACCTCTCGGTTTCCGGTGGCGGCTCCAACGCTGTGTTCGGTGCCACGGCTGACACGAGCAC CACGATCATCGACAATGGTGGCACGAACGCTGGCACGGCTGAAACCGTTGCAAACGGCGCCACGCAAACGATCGCAATTG CTTCGGTTGGCGATGGCTACAGCTACCGCGTCACGCTTGACGACTCGGCCGGTGCCAACTCGCTCGGCACACGCAGCTTC GAATTTGTGGCTGACTCGGCCACCAGCTCGGAAGACGTTGCCGAAGCTCTGTCGACGCAGATCAGCAACTTCCTCTCGGC CACGGGTGACGACAACTACACCGTCTCCTTCAGCGGTTCGGACATCTCGATCACCAACCTTTCGGGCGATGATCTGGACA TCACCGGTGCTGCAGCAGCCGACGGTACAGCTGGCGTTAACGCCGGCGGCCTGGGCGCGCTCGCCAGCATTGATGTCACG ACCAATGCAGGGGCAACCTCCGCCCTGACGGCCATTGAAGGCCTGATGAACAAAGCGATCGACGCGGCCGCTGCTTTCGG TTCTTCGCAGAACCGCATCGCTGGCCAGTCTGAATTCGTTCAGACGCTGGTTGACTCTCTGACAACCGGTATCGGTGGCC TCACCGACACCGACATGGAAGCGGCTTCGGCAAAACTGCAGGCTCTGCAGGTTCAGCAACAGCTCGGCGTTCAGGCGCTG TCGATTGCGAACCAGGCGCCTCAGGCTCTGCTGTCGCTCTTCCGCTAA
Upstream 100 bases:
>100_bases GAACTACGAAAGTTCGGGGCTTCGGCTCCAACGTCAGGACGACGCGTTTCAACAAACAGCCGCAGTCAAAAATAGCGGCG ACACAAGAATGGATAGATAG
Downstream 100 bases:
>100_bases CGGACCTTATAGCTCCAGGCGCTCTGGCGCCTGGAGCGCTGAATTAAACCGATTGCCCCGGACGTTTCGGCGTCCGGGTC AATTCATCAGATACCCAGGA
Product: flagellin Laf1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSSILTNNSSMVALETLRNINRNLETVQSEISTGKKVSNAKDNAAVWAVSTVMSSDVASFKAISDSLNLGSSTVGVARSA SEKVVTTLEEIKTLIVQAQGENVDRAKYQTDIEEKIGLIEGYVSAAQFNGLNLLDGSSTDAVNVLASLDRASNGTVSASY ISVDRQDLSVSGGGSNAVFGATADTSTTIIDNGGTNAGTAETVANGATQTIAIASVGDGYSYRVTLDDSAGANSLGTRSF EFVADSATSSEDVAEALSTQISNFLSATGDDNYTVSFSGSDISITNLSGDDLDITGAAAADGTAGVNAGGLGALASIDVT TNAGATSALTAIEGLMNKAIDAAAAFGSSQNRIAGQSEFVQTLVDSLTTGIGGLTDTDMEAASAKLQALQVQQQLGVQAL SIANQAPQALLSLFR
Sequences:
>Translated_415_residues MSSILTNNSSMVALETLRNINRNLETVQSEISTGKKVSNAKDNAAVWAVSTVMSSDVASFKAISDSLNLGSSTVGVARSA SEKVVTTLEEIKTLIVQAQGENVDRAKYQTDIEEKIGLIEGYVSAAQFNGLNLLDGSSTDAVNVLASLDRASNGTVSASY ISVDRQDLSVSGGGSNAVFGATADTSTTIIDNGGTNAGTAETVANGATQTIAIASVGDGYSYRVTLDDSAGANSLGTRSF EFVADSATSSEDVAEALSTQISNFLSATGDDNYTVSFSGSDISITNLSGDDLDITGAAAADGTAGVNAGGLGALASIDVT TNAGATSALTAIEGLMNKAIDAAAAFGSSQNRIAGQSEFVQTLVDSLTTGIGGLTDTDMEAASAKLQALQVQQQLGVQAL SIANQAPQALLSLFR >Mature_414_residues SSILTNNSSMVALETLRNINRNLETVQSEISTGKKVSNAKDNAAVWAVSTVMSSDVASFKAISDSLNLGSSTVGVARSAS EKVVTTLEEIKTLIVQAQGENVDRAKYQTDIEEKIGLIEGYVSAAQFNGLNLLDGSSTDAVNVLASLDRASNGTVSASYI SVDRQDLSVSGGGSNAVFGATADTSTTIIDNGGTNAGTAETVANGATQTIAIASVGDGYSYRVTLDDSAGANSLGTRSFE FVADSATSSEDVAEALSTQISNFLSATGDDNYTVSFSGSDISITNLSGDDLDITGAAAADGTAGVNAGGLGALASIDVTT NAGATSALTAIEGLMNKAIDAAAAFGSSQNRIAGQSEFVQTLVDSLTTGIGGLTDTDMEAASAKLQALQVQQQLGVQALS IANQAPQALLSLFR
Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Homopolymer of flaA is able to form a functional filament [H]
COG id: COG1344
COG function: function code N; Flagellin and related hook-associated proteins
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial flagellin family [H]
Homologues:
None
Paralogues:
None
Copy number: 200,000-400,000 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001492 - InterPro: IPR001029 [H]
Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]
EC number: NA
Molecular weight: Translated: 42041; Mature: 41910
Theoretical pI: Translated: 3.87; Mature: 3.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSILTNNSSMVALETLRNINRNLETVQSEISTGKKVSNAKDNAAVWAVSTVMSSDVASF CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH KAISDSLNLGSSTVGVARSASEKVVTTLEEIKTLIVQAQGENVDRAKYQTDIEEKIGLIE HHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCHHHHHHHHH GYVSAAQFNGLNLLDGSSTDAVNVLASLDRASNGTVSASYISVDRQDLSVSGGGSNAVFG HHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCEEE ATADTSTTIIDNGGTNAGTAETVANGATQTIAIASVGDGYSYRVTLDDSAGANSLGTRSF ECCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCE EFVADSATSSEDVAEALSTQISNFLSATGDDNYTVSFSGSDISITNLSGDDLDITGAAAA EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCC DGTAGVNAGGLGALASIDVTTNAGATSALTAIEGLMNKAIDAAAAFGSSQNRIAGQSEFV CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH QTLVDSLTTGIGGLTDTDMEAASAKLQALQVQQQLGVQALSIANQAPQALLSLFR HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure SSILTNNSSMVALETLRNINRNLETVQSEISTGKKVSNAKDNAAVWAVSTVMSSDVASF CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH KAISDSLNLGSSTVGVARSASEKVVTTLEEIKTLIVQAQGENVDRAKYQTDIEEKIGLIE HHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCHHHHHHHHH GYVSAAQFNGLNLLDGSSTDAVNVLASLDRASNGTVSASYISVDRQDLSVSGGGSNAVFG HHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCEEE ATADTSTTIIDNGGTNAGTAETVANGATQTIAIASVGDGYSYRVTLDDSAGANSLGTRSF ECCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCE EFVADSATSSEDVAEALSTQISNFLSATGDDNYTVSFSGSDISITNLSGDDLDITGAAAA EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCC DGTAGVNAGGLGALASIDVTTNAGATSALTAIEGLMNKAIDAAAAFGSSQNRIAGQSEFV CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH QTLVDSLTTGIGGLTDTDMEAASAKLQALQVQQQLGVQALSIANQAPQALLSLFR HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2050631; 11481430 [H]