Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
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Accession | NC_008358 |
Length | 3,705,021 |
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The map label for this gene is flaF [H]
Identifier: 114798597
GI number: 114798597
Start: 253746
End: 254132
Strand: Direct
Name: flaF [H]
Synonym: HNE_0265
Alternate gene names: 114798597
Gene position: 253746-254132 (Clockwise)
Preceding gene: 114799536
Following gene: 114797786
Centisome position: 6.85
GC content: 56.85
Gene sequence:
>387_bases GTGCAGGCTTTGGCATATAAGGCCTATGGCCAGGTTACGCAGAGGACTGCGACCGGCCGGGCACTTGAATACGCAGTGTT CGAACAGATCACGCGGGATCTCCAAAGCGTACATGACGATGGCGGCGCCAATACGGGCGCCTGGGGCGATGCGATTTATC GCAATCTGCAGCTCTGGACCATCATCGCGACAGATCTTCTCAGCGCGGAAAACGCGCTTCCAGATGAGACCAAAGCGGGC CTCATCTCCCTTTCCGAATTTGTACGGCGCACCAGCATGAAGATCCTTTCCGGCACGGAAGGACTTGAAGACATCATTGA GGTGAACCGCACGATCATGGCCGGCCTGGATGGCTCGGCTGCATCAGTAGAGCAGGAGGTTATCTGA
Upstream 100 bases:
>100_bases GCTCCAGGCGCTCTGGCGCCTGGAGCGCTGAATTAAACCGATTGCCCCGGACGTTTCGGCGTCCGGGTCAATTCATCAGA TACCCAGGAGGGGATCGAAC
Downstream 100 bases:
>100_bases TGTCTGGACTGGTACTCAAAATTGCGCCCGGCGAACGCTTCATCATCAATGGCGCGACGCTGGAAAATGGTGACAAGCCT GCCCGTATTCGTGTTGTCGA
Product: putative flagellar biosynthesis regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 128; Mature: 128
Protein sequence:
>128_residues MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLLSAENALPDETKAG LISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSAASVEQEVI
Sequences:
>Translated_128_residues MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLLSAENALPDETKAG LISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSAASVEQEVI >Mature_128_residues MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLLSAENALPDETKAG LISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSAASVEQEVI
Specific function: Required for synthesis of the 25 kDa and 27 kDa flagellins and appears to be important for flagellin assembly [H]
COG id: COG5442
COG function: function code N; Flagellar biosynthesis regulator FlaF
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010845 [H]
Pfam domain/function: PF07309 FlaF [H]
EC number: NA
Molecular weight: Translated: 13879; Mature: 13879
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWT CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH IIATDLLSAENALPDETKAGLISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH ASVEQEVI HHHHHHCC >Mature Secondary Structure MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWT CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH IIATDLLSAENALPDETKAGLISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH ASVEQEVI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1699845; 11259647 [H]