Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is flaF [H]

Identifier: 114798597

GI number: 114798597

Start: 253746

End: 254132

Strand: Direct

Name: flaF [H]

Synonym: HNE_0265

Alternate gene names: 114798597

Gene position: 253746-254132 (Clockwise)

Preceding gene: 114799536

Following gene: 114797786

Centisome position: 6.85

GC content: 56.85

Gene sequence:

>387_bases
GTGCAGGCTTTGGCATATAAGGCCTATGGCCAGGTTACGCAGAGGACTGCGACCGGCCGGGCACTTGAATACGCAGTGTT
CGAACAGATCACGCGGGATCTCCAAAGCGTACATGACGATGGCGGCGCCAATACGGGCGCCTGGGGCGATGCGATTTATC
GCAATCTGCAGCTCTGGACCATCATCGCGACAGATCTTCTCAGCGCGGAAAACGCGCTTCCAGATGAGACCAAAGCGGGC
CTCATCTCCCTTTCCGAATTTGTACGGCGCACCAGCATGAAGATCCTTTCCGGCACGGAAGGACTTGAAGACATCATTGA
GGTGAACCGCACGATCATGGCCGGCCTGGATGGCTCGGCTGCATCAGTAGAGCAGGAGGTTATCTGA

Upstream 100 bases:

>100_bases
GCTCCAGGCGCTCTGGCGCCTGGAGCGCTGAATTAAACCGATTGCCCCGGACGTTTCGGCGTCCGGGTCAATTCATCAGA
TACCCAGGAGGGGATCGAAC

Downstream 100 bases:

>100_bases
TGTCTGGACTGGTACTCAAAATTGCGCCCGGCGAACGCTTCATCATCAATGGCGCGACGCTGGAAAATGGTGACAAGCCT
GCCCGTATTCGTGTTGTCGA

Product: putative flagellar biosynthesis regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLLSAENALPDETKAG
LISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSAASVEQEVI

Sequences:

>Translated_128_residues
MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLLSAENALPDETKAG
LISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSAASVEQEVI
>Mature_128_residues
MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLLSAENALPDETKAG
LISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSAASVEQEVI

Specific function: Required for synthesis of the 25 kDa and 27 kDa flagellins and appears to be important for flagellin assembly [H]

COG id: COG5442

COG function: function code N; Flagellar biosynthesis regulator FlaF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010845 [H]

Pfam domain/function: PF07309 FlaF [H]

EC number: NA

Molecular weight: Translated: 13879; Mature: 13879

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
IIATDLLSAENALPDETKAGLISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH
ASVEQEVI
HHHHHHCC
>Mature Secondary Structure
MQALAYKAYGQVTQRTATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
IIATDLLSAENALPDETKAGLISLSEFVRRTSMKILSGTEGLEDIIEVNRTIMAGLDGSA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH
ASVEQEVI
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1699845; 11259647 [H]