| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is nrdJ [H]
Identifier: 114799028
GI number: 114799028
Start: 2354987
End: 2357239
Strand: Direct
Name: nrdJ [H]
Synonym: HNE_2255
Alternate gene names: 114799028
Gene position: 2354987-2357239 (Clockwise)
Preceding gene: 114797414
Following gene: 114799805
Centisome position: 63.56
GC content: 66.27
Gene sequence:
>2253_bases ATGGCAGCAAAATCGCATGCGGAAATCCTGGAAGCAGCAGAAGCGGACGGGCTCGTCTCCCGCGAAGTGCGGATGCGGGA CATTTCCCGGTCAGCCGGCCGCGCCCTTCAGCCGCTGACACCCGCCGCCCTGGAACAGGTTCGCGCGGCCTGGTCTGCCG CAAATCTGCTCGGTGTATCCCAGCTTGCGACCGCCGAAATGCTCGAGCGCCTCGGCGAAGCGCCCCGCAATGCCGAACTG GCCGAAGCCATCGCCGCTGGTCTGCCACAGGATGTGCTGGAAGAGGCGCTCCGCCAGCCTGGCGGCATCCAGAAAACCGC CGCCGCCCTGCGCGCCGCTGCCGTCAGCACACCTTCACCTCGCCCCGGCATGTTCGAGACGGGCCATCTCGATGGCGTCC TCAGCGACGCGCTCGATGCGCTGCTCGACGAAGGCGCGGAAATCCACCTTGCTCGCGCGCCGCTGCCTGATGCCGCCACC CGTTGCCGCGTGATCGATGTCGCCACCGCTATTGGACCGGGGGGCCTTGAGGCCGACTATCTCATTTCTTCCGCCGACGC GGCGGGTCGCGCTCTGTCCGATGGTGTGCTGGTCATCGCCGGCCTCGGCGCCGCTGTCATGTCCCTCGGGCTCGATTATG CCTCCGAGACGGGCATTGGCGCCGGTGCTGCCCTGACCGCCCTGGTCCGGTCCGCTGCGACCGGCGCGGCCTTCCCGGCA GCCCACGCGCGCATTCTTGGCCTGGAAGCGGTGAAGGCCGGCGGGCGCCGCGCCTGCCAGGTCGCCATCCTGCCCCTCAT GGATCTCGCCAATATTCTGCCGGACTGCGAAAGCGAAGGCGCCGCGCCGGTGCGCACCGTGCTCGCCTACGGGGAAGACG CCCCCTCACTTGGCCGCGCAGCCCGCCTCGGCCTCGCGCGCCGGGCACCCGAACAGCTGCCAGTCTTGCTGGGCCGTCTC GCCAGCGCCGGAGAACAGGACCTCGACGCCGCCCTTGGCCGCACAAAGCTGCGCGACCGGGGTTTCAGCGATGATGCCAT CGAGCGAGTCACCCGCGCTATCGGCGACGGCCTGCCGCTCAGCGCGGCGTTCTCCCGCTGGGTTCTGGGCGACGAGATCA TCAGCAATGATCTGCGTCTGTCGCCGGAGCGGTTTGATTCTGATGGCCGCGCTCTGCTGTCTGCGGTGGGCTTCTCCAAG AAAGACATCGCGGCGGCGGAAGAAGCCATCGATGGCGCCGTCGAGGACATTGCCGGCAAAGGCCTGGCGGCCGCTGGCCT GTCGCTGAGCATTTCGATGGACGCGGAATTGCGGTTCACATCTGCGGCCGCTCGCGCGCTCAATGGCATGGCAATGCTGC GCGTGCCCGCCCAGGAAGGCCTCAACATGGCGGAGGCGGCGATGGCTGCAGGTCTGTCCGTGCTGCTGACCGGCCACCGG ACGCCCCCGTCTGAAGACGTGCGGGATCGTATGGAGCAAATCCTCTCGCTGGCGGATGAAATCGCCGAAGAGGCCGACGC CCTGCCCGATCTGCCCGTGCTCACCGACGCGCTGCCGCCCGTCCGCCGCACACGCCTGCCCGATCGCCGCAAAGGCTACA TCCAGAAAGCCACGGTTGGCGGCCACAAGGTCTACCTGCACACCGGCGAATTCGACGATGGCAGCCTGGGTGAAATCTTC ATCGACATGCACAAGGAAGGCGCCGCCTTCCGCAGCCTGATGAACAACTTTGCCATCTCGGTATCCCTCGGCCTGCAGTA TGGCGTACCGCTGGAAGAGTATGCCGATGCCTTCGTCTTCACCCGGTTTGAACCAGCCGGCGAAGTGACCGGGAATGACC GGATCACGAAAGCCACGTCGATCCTCGACTATATCTTCCGCGAACTGGCACTGTCCTATCTGGGCCGGGACGATCTTGCC GAAGCCGATGTCACCCATGACGGCCTTGGCCGGGGCGCGGGCGACGCCACCCGCGGCGCCCAAACCGCCCCGTTCACCAC CGAAGCTGCCCAGATCATCTCTCGAGGCTTCTCCCGCGGCCAACTGCCGGACAACATCGTTATTCTGAACAAGCGTCGCG CAGAAAAGGCATCTGAAGAGGCAGAAGACGGCGAGGAAGAGACCATAGATCTCACACCCGCCTATCTGGCCCAGCCTTGC CCCGCCTGTGGCAGCTTTACCCTCTTTGAGGCTTCGCCGGACGGCCATCAGGCCTGCGATACCTGCGGCGAAGAAAGCAG AGCCACTCAATAA
Upstream 100 bases:
>100_bases TGCGGGCGTTCGGCTGCTGTGTGTGCCTCAAAAGCGGTTGCCGCGAGGGGGGCAAGCAGGCACCCTGACCGGGAGTGATT CGGCAGGAGGCACGGGACAG
Downstream 100 bases:
>100_bases CCCCAAAGGCGAGCGCGCTGGCCGATTCTGCCCCTCTCAAGGGGAGAATTAACTATGCCGCAGCGTCACACTGTATTGCA CGGCGGCAACAGTTACCGGC
Product: ribonucleoside reductase-like protein
Products: NA
Alternate protein names: Ribonucleoside-diphosphate reductase nrdJ [H]
Number of amino acids: Translated: 750; Mature: 749
Protein sequence:
>750_residues MAAKSHAEILEAAEADGLVSREVRMRDISRSAGRALQPLTPAALEQVRAAWSAANLLGVSQLATAEMLERLGEAPRNAEL AEAIAAGLPQDVLEEALRQPGGIQKTAAALRAAAVSTPSPRPGMFETGHLDGVLSDALDALLDEGAEIHLARAPLPDAAT RCRVIDVATAIGPGGLEADYLISSADAAGRALSDGVLVIAGLGAAVMSLGLDYASETGIGAGAALTALVRSAATGAAFPA AHARILGLEAVKAGGRRACQVAILPLMDLANILPDCESEGAAPVRTVLAYGEDAPSLGRAARLGLARRAPEQLPVLLGRL ASAGEQDLDAALGRTKLRDRGFSDDAIERVTRAIGDGLPLSAAFSRWVLGDEIISNDLRLSPERFDSDGRALLSAVGFSK KDIAAAEEAIDGAVEDIAGKGLAAAGLSLSISMDAELRFTSAAARALNGMAMLRVPAQEGLNMAEAAMAAGLSVLLTGHR TPPSEDVRDRMEQILSLADEIAEEADALPDLPVLTDALPPVRRTRLPDRRKGYIQKATVGGHKVYLHTGEFDDGSLGEIF IDMHKEGAAFRSLMNNFAISVSLGLQYGVPLEEYADAFVFTRFEPAGEVTGNDRITKATSILDYIFRELALSYLGRDDLA EADVTHDGLGRGAGDATRGAQTAPFTTEAAQIISRGFSRGQLPDNIVILNKRRAEKASEEAEDGEEETIDLTPAYLAQPC PACGSFTLFEASPDGHQACDTCGEESRATQ
Sequences:
>Translated_750_residues MAAKSHAEILEAAEADGLVSREVRMRDISRSAGRALQPLTPAALEQVRAAWSAANLLGVSQLATAEMLERLGEAPRNAEL AEAIAAGLPQDVLEEALRQPGGIQKTAAALRAAAVSTPSPRPGMFETGHLDGVLSDALDALLDEGAEIHLARAPLPDAAT RCRVIDVATAIGPGGLEADYLISSADAAGRALSDGVLVIAGLGAAVMSLGLDYASETGIGAGAALTALVRSAATGAAFPA AHARILGLEAVKAGGRRACQVAILPLMDLANILPDCESEGAAPVRTVLAYGEDAPSLGRAARLGLARRAPEQLPVLLGRL ASAGEQDLDAALGRTKLRDRGFSDDAIERVTRAIGDGLPLSAAFSRWVLGDEIISNDLRLSPERFDSDGRALLSAVGFSK KDIAAAEEAIDGAVEDIAGKGLAAAGLSLSISMDAELRFTSAAARALNGMAMLRVPAQEGLNMAEAAMAAGLSVLLTGHR TPPSEDVRDRMEQILSLADEIAEEADALPDLPVLTDALPPVRRTRLPDRRKGYIQKATVGGHKVYLHTGEFDDGSLGEIF IDMHKEGAAFRSLMNNFAISVSLGLQYGVPLEEYADAFVFTRFEPAGEVTGNDRITKATSILDYIFRELALSYLGRDDLA EADVTHDGLGRGAGDATRGAQTAPFTTEAAQIISRGFSRGQLPDNIVILNKRRAEKASEEAEDGEEETIDLTPAYLAQPC PACGSFTLFEASPDGHQACDTCGEESRATQ >Mature_749_residues AAKSHAEILEAAEADGLVSREVRMRDISRSAGRALQPLTPAALEQVRAAWSAANLLGVSQLATAEMLERLGEAPRNAELA EAIAAGLPQDVLEEALRQPGGIQKTAAALRAAAVSTPSPRPGMFETGHLDGVLSDALDALLDEGAEIHLARAPLPDAATR CRVIDVATAIGPGGLEADYLISSADAAGRALSDGVLVIAGLGAAVMSLGLDYASETGIGAGAALTALVRSAATGAAFPAA HARILGLEAVKAGGRRACQVAILPLMDLANILPDCESEGAAPVRTVLAYGEDAPSLGRAARLGLARRAPEQLPVLLGRLA SAGEQDLDAALGRTKLRDRGFSDDAIERVTRAIGDGLPLSAAFSRWVLGDEIISNDLRLSPERFDSDGRALLSAVGFSKK DIAAAEEAIDGAVEDIAGKGLAAAGLSLSISMDAELRFTSAAARALNGMAMLRVPAQEGLNMAEAAMAAGLSVLLTGHRT PPSEDVRDRMEQILSLADEIAEEADALPDLPVLTDALPPVRRTRLPDRRKGYIQKATVGGHKVYLHTGEFDDGSLGEIFI DMHKEGAAFRSLMNNFAISVSLGLQYGVPLEEYADAFVFTRFEPAGEVTGNDRITKATSILDYIFRELALSYLGRDDLAE ADVTHDGLGRGAGDATRGAQTAPFTTEAAQIISRGFSRGQLPDNIVILNKRRAEKASEEAEDGEEETIDLTPAYLAQPCP ACGSFTLFEASPDGHQACDTCGEESRATQ
Specific function: Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribonucleoside diphosphate reductase class-2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002876 - InterPro: IPR017856 - InterPro: IPR013344 - InterPro: IPR000788 - InterPro: IPR013678 [H]
Pfam domain/function: PF08471 Ribonuc_red_2_N; PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 78396; Mature: 78265
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKSHAEILEAAEADGLVSREVRMRDISRSAGRALQPLTPAALEQVRAAWSAANLLGVS CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH QLATAEMLERLGEAPRNAELAEAIAAGLPQDVLEEALRQPGGIQKTAAALRAAAVSTPSP HHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC RPGMFETGHLDGVLSDALDALLDEGAEIHLARAPLPDAATRCRVIDVATAIGPGGLEADY CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHEEEEEHHHHCCCCCCCHHH LISSADAAGRALSDGVLVIAGLGAAVMSLGLDYASETGIGAGAALTALVRSAATGAAFPA HEECCCHHCCHHCCCEEEEEHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHH AHARILGLEAVKAGGRRACQVAILPLMDLANILPDCESEGAAPVRTVLAYGEDAPSLGRA HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHH ARLGLARRAPEQLPVLLGRLASAGEQDLDAALGRTKLRDRGFSDDAIERVTRAIGDGLPL HHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH SAAFSRWVLGDEIISNDLRLSPERFDSDGRALLSAVGFSKKDIAAAEEAIDGAVEDIAGK HHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC GLAAAGLSLSISMDAELRFTSAAARALNGMAMLRVPAQEGLNMAEAAMAAGLSVLLTGHR CCEECCCEEEEEECCCCHHHHHHHHHHCCCEEEEECHHHCCCHHHHHHHCCCCEEEECCC TPPSEDVRDRMEQILSLADEIAEEADALPDLPVLTDALPPVRRTRLPDRRKGYIQKATVG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCHHHCCEEEEECC GHKVYLHTGEFDDGSLGEIFIDMHKEGAAFRSLMNNFAISVSLGLQYGVPLEEYADAFVF CEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCEEEEEECCCCCCCHHHHCCHHEE TRFEPAGEVTGNDRITKATSILDYIFRELALSYLGRDDLAEADVTHDGLGRGAGDATRGA EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCC QTAPFTTEAAQIISRGFSRGQLPDNIVILNKRRAEKASEEAEDGEEETIDLTPAYLAQPC CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHCCC PACGSFTLFEASPDGHQACDTCGEESRATQ CCCCCEEEEECCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure AAKSHAEILEAAEADGLVSREVRMRDISRSAGRALQPLTPAALEQVRAAWSAANLLGVS CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH QLATAEMLERLGEAPRNAELAEAIAAGLPQDVLEEALRQPGGIQKTAAALRAAAVSTPSP HHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC RPGMFETGHLDGVLSDALDALLDEGAEIHLARAPLPDAATRCRVIDVATAIGPGGLEADY CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHEEEEEHHHHCCCCCCCHHH LISSADAAGRALSDGVLVIAGLGAAVMSLGLDYASETGIGAGAALTALVRSAATGAAFPA HEECCCHHCCHHCCCEEEEEHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHH AHARILGLEAVKAGGRRACQVAILPLMDLANILPDCESEGAAPVRTVLAYGEDAPSLGRA HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHH ARLGLARRAPEQLPVLLGRLASAGEQDLDAALGRTKLRDRGFSDDAIERVTRAIGDGLPL HHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH SAAFSRWVLGDEIISNDLRLSPERFDSDGRALLSAVGFSKKDIAAAEEAIDGAVEDIAGK HHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC GLAAAGLSLSISMDAELRFTSAAARALNGMAMLRVPAQEGLNMAEAAMAAGLSVLLTGHR CCEECCCEEEEEECCCCHHHHHHHHHHCCCEEEEECHHHCCCHHHHHHHCCCCEEEECCC TPPSEDVRDRMEQILSLADEIAEEADALPDLPVLTDALPPVRRTRLPDRRKGYIQKATVG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCHHHCCEEEEECC GHKVYLHTGEFDDGSLGEIFIDMHKEGAAFRSLMNNFAISVSLGLQYGVPLEEYADAFVF CEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCEEEEEECCCCCCCHHHHCCHHEE TRFEPAGEVTGNDRITKATSILDYIFRELALSYLGRDDLAEADVTHDGLGRGAGDATRGA EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCC QTAPFTTEAAQIISRGFSRGQLPDNIVILNKRRAEKASEEAEDGEEETIDLTPAYLAQPC CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHCCC PACGSFTLFEASPDGHQACDTCGEESRATQ CCCCCEEEEECCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]