| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is glnD [H]
Identifier: 114797974
GI number: 114797974
Start: 510405
End: 513248
Strand: Direct
Name: glnD [H]
Synonym: HNE_0518
Alternate gene names: 114797974
Gene position: 510405-513248 (Clockwise)
Preceding gene: 114799247
Following gene: 114797264
Centisome position: 13.78
GC content: 64.14
Gene sequence:
>2844_bases ATGACCTCTCCGAACAAACCGCCTCCGACCCTCGTTGCATCCGCCCGCCCCCCGGCCGCCCGCCGGCCGGGCAAATGGCG CATTGCCGACATCATTGACGGCCGCGCCCTGCGGGTGAAGCTGACAGCCGCCGCGCTGGACAATATCGGCAGCGATGCCG CCGCCCGAAAATCTGCGCTGAACCTGCTGCACGGCGCCATGTTCCGGGGCCGCCTGATCGCGCAGGAGCGACTGCAGCAG GGGGCGGACGGGCTGGATACGGCTCGCCTTCTGGCCGCGGTGCAGGATGAAGTCATCCACGCGCTGTATGATTTCACCGT CACGCACGTTCACCGCGCCTCAAACCCGACCGAGGCCGAACGCCTGGCGATCCTCGCCACCGGCGGTTATGGCCGCAGCG TGATGGCGCCGTCGTCCGATACAGACCTGCTCTTCCTGCGCGCCTATAAGGCCAGCCCGCATACAGAGAGTGTCATCGAA TACATGCTCTATGCCCTCTGGGACATGGGGCTGAAAGTCGGCAATGCCTTCCGTACACCGCTTGATTGCGTCAAGCTGGC GGCGGAGGATGTTACCATCAAGACCAGCCTGCTGGACGCCCGGTTCATCTGCGGGGATGAAGTGCTGGCCAATGACATGA TGGCGCTGTTCCAGAAGGATGCCGTCAAGGGCAAGGACGCCCAGTTCATTGCCGACAAGCTGGCCGAGCGCGATTCCCGG CACACACGGATGGGCGATGCGCGCTATGTCGTTGAGCCGAATGTGAAAGACGGCAAGGGCGGCCTGCGCGACCTGCAGAC GCTCTACTGGATCGTCAAGCACATGTATGGCGGGCGCACGCTGGAAGATGTGATGCATGCTGGTCCGTTTACGGATCATG AGTATGCGACCTTCATTCGCGCTGCCCGGTTCCTCTGGACGGTGCGCTGCCACATGCATTTTGTCACCGGGCGCGCCGAA GACCGGCTGAGCTTTGACCTCCAGCCTGAGATCGCCTCCCGCATGGGGTACCGCGACCGGGAAGGGCAGCAGGGGGTGGA GCGCTTCATGAAGCGCTATTTCCTCGTGGCCAAGGATGTCGGCGGACTGACGCGTATTCTGGCCGCCAAGCTGGAAGCCG ATCACAAGAAGAAACCCGAAGGCTTGCGCCGCTTCCTGCCTTCTCGCCCGCCCCAACCGCTGGCCGAAACAGGCTTCCTG ATCGAGGCGGGCCGCATCAACATCACCGAAGACAAGGTGATGTCGGATGATCCGCTCAACATGATCCGCCTGTTCACCAT CGCCCGGCGCGAACAGAAGGATATTCACCCCGCCGCGCTCACCGCGCTCACCCGGAAACTCCGGGGGCTGAATGAGGCAG CGCGGGAAACAGACAGCGCGCGCGAGCTCATCCTCGATGCCATCCTCGGCGGCAAGGAGCCTGGCCCGATCTTGCGCCGC ATGAATGAAGCCGGTGTTCTCGGCCGCGCCATTCCCGAGTTCGGCTCCATCGTCGCCCAGACGCAGTTCAACATGTATCA TCACTATACGGTGGATGAGCATACGCTGCGCGCGGTCGAAACGATCGCAGACCTCGAATATGGCCGGGGCGGCACGGCGC CGCTGGCCACAGAACTCTTCGGCCAGATTGAAAACCGCCGTGCGCTCTATCTGGCGATGCTTCTGCACGATACCGGCAAG GGCAAGGGCGACCAGCAGGAAGCCGGCATGCGCACCTCGCGCCGCGCCTGCGAGCGCCTCGGCATCCCGGACGAGGAAAC CGATCTCGTCGTCTGGCTGGTCGGCCACCATCTGGAAATGAGTGAGACCGCCCAGAAGCGTGACATTGGCGACCCGCGCA CCGTGGCGACCTTCGCGCGCCTTGTCGGCTCGCTGGAGCGGCTGCGTCTCCTCTACATTCTCACTGTTGCCGACATCAAA GCCGTTGGCCCCGCCGTGTGGAACGCGTGGAAGGGCCAGCTTCTGGCCGATCTCTATCACAACACTGCCGCCGCCCTGCG CGGCGGGCGTACCGATGAAGCCGCCGTACTCTCCGAACTGGAGCGCCGCGCCGAGATGCGCCGCGAAGCCCTCGTCGAGC GTATCGGCTCGGTGCCTTCGTTGCTGCTGGAACTCGAAACCGCCTACTGGACGGGCTTTGATCCCGACGACATCGCCTGG CATGCCGCGGCCCTTTCAAAAGGCGGCGAGGTGGTCACCTCTCGCATGGCGCCTGAAGGCGGGGCCGTTGCACTGCTGGT GTCGGGCAAGGACCGCACCGGTCTCTTCGCCGATCTCGCCGGAACGCTCGCGCGCCTCGGCGCCAATATTGTCGCCGCAC AGGTTTTCACTTCCAAGGGCGGGCGCATCGTTGACGTGTTCATGCTGCAGGACGCCCGCGGCCTCCCTTATGGCGAGGGC GACGGGCCGCGCCTGGCAAAGCTGGAACAGGCCATCCTCGGCGCGCTGGGCGGCACAGTCCCCAGCGGCTCGGTCAAATC CCGCGCTGGCCGGCGTGAAGCTGCCTTCCTGGTTCAGCCCTCGGTGCAGATCCATGAAGAAGTCTCGATCGAGCATATGG TCATCGATGTCGCTGCGCGCGACCGGCCCGGCCTGCTGCATGAAGTGGCTGAAGTGCTCGCTGATATGAAGCTCTCGATC CATTCGGCGCATGTCGGCTCCTATGGGGAGCGGGTGTTCGATGCGTTCTATGTGAAACCCGGCAGCCCCTCAGGCAAGAT TTCCAAAGCCCGCAAAGAAGCCCTCCGGGAACGTCTTTTCGCCGTACTTTTGCGGGAAGAACCAGAAGGCCCGCACACTC CGGCCCGCAAGCTCAAACGCTCGCGCGCCGTGGACAGCTTCTGA
Upstream 100 bases:
>100_bases TCTCGCCAATTCGCCCTTATGGTACAACAAGGTGCACACGATTGTGGGGTAAGCACAGGGCGATAGCCGAACCCGGCAAA CCTGCTATGTTGCGCCCCGC
Downstream 100 bases:
>100_bases GAATTGGTTCAACCGGGGTATCCATGAGCCTCGCCCGCAACACTGCCGTTCAGGCCTCGCTGACCCTGGCGAGCCGCATC CTTGGCCTCGCGCGGGATGT
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 947; Mature: 946
Protein sequence:
>947_residues MTSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSALNLLHGAMFRGRLIAQERLQQ GADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAERLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIE YMLYALWDMGLKVGNAFRTPLDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIRAARFLWTVRCHMHFVTGRAE DRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDVGGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFL IEAGRINITEDKVMSDDPLNMIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELFGQIENRRALYLAMLLHDTGK GKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEMSETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIK AVGPAVWNAWKGQLLADLYHNTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKGGRIVDVFMLQDARGLPYGEG DGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQPSVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSI HSAHVGSYGERVFDAFYVKPGSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF
Sequences:
>Translated_947_residues MTSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSALNLLHGAMFRGRLIAQERLQQ GADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAERLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIE YMLYALWDMGLKVGNAFRTPLDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIRAARFLWTVRCHMHFVTGRAE DRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDVGGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFL IEAGRINITEDKVMSDDPLNMIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELFGQIENRRALYLAMLLHDTGK GKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEMSETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIK AVGPAVWNAWKGQLLADLYHNTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKGGRIVDVFMLQDARGLPYGEG DGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQPSVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSI HSAHVGSYGERVFDAFYVKPGSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF >Mature_946_residues TSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSALNLLHGAMFRGRLIAQERLQQG ADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAERLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIEY MLYALWDMGLKVGNAFRTPLDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSRH TRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIRAARFLWTVRCHMHFVTGRAED RLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDVGGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFLI EAGRINITEDKVMSDDPLNMIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRRM NEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELFGQIENRRALYLAMLLHDTGKG KGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEMSETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIKA VGPAVWNAWKGQLLADLYHNTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAWH AAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKGGRIVDVFMLQDARGLPYGEGD GPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQPSVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSIH SAHVGSYGERVFDAFYVKPGSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=805, Percent_Identity=31.1801242236025, Blast_Score=362, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 104256; Mature: 104125
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSAL CCCCCCCCCCEEECCCCCCCCCCCCEEEHEECCCCEEEEEEHHHHHHCCCCHHHHHHHHH NLLHGAMFRGRLIAQERLQQGADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH RLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIEYMLYALWDMGLKVGNAFRTP EEEEEEECCCCCCEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHCCH LDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR HHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIR HCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH AARFLWTVRCHMHFVTGRAEDRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDV HHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC GGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFLIEAGRINITEDKVMSDDPLN CHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHCCCEEECCEEEECCCCCCCCCCHH MIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELF HHHCCHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHH GQIENRRALYLAMLLHDTGKGKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEM HHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCH SETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIKAVGPAVWNAWKGQLLADLYH HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKG HHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC GRIVDVFMLQDARGLPYGEGDGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQP CEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECC SVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSIHSAHVGSYGERVFDAFYVKP CHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECC GSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSAL CCCCCCCCCEEECCCCCCCCCCCCEEEHEECCCCEEEEEEHHHHHHCCCCHHHHHHHHH NLLHGAMFRGRLIAQERLQQGADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH RLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIEYMLYALWDMGLKVGNAFRTP EEEEEEECCCCCCEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHCCH LDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR HHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIR HCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH AARFLWTVRCHMHFVTGRAEDRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDV HHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC GGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFLIEAGRINITEDKVMSDDPLN CHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHCCCEEECCEEEECCCCCCCCCCHH MIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELF HHHCCHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHH GQIENRRALYLAMLLHDTGKGKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEM HHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCH SETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIKAVGPAVWNAWKGQLLADLYH HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKG HHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC GRIVDVFMLQDARGLPYGEGDGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQP CEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECC SVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSIHSAHVGSYGERVFDAFYVKP CHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECC GSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA