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The map label for this gene is yncD [C]

Identifier: 114797743

GI number: 114797743

Start: 2491975

End: 2494302

Strand: Direct

Name: yncD [C]

Synonym: HNE_2389

Alternate gene names: 114797743

Gene position: 2491975-2494302 (Clockwise)

Preceding gene: 114798764

Following gene: 114799861

Centisome position: 67.26

GC content: 61.34

Gene sequence:

>2328_bases
TTGAAAAAACTCAACTGCCGCCCGTTGCTCACCGGCACATCGGCGCTCGCACTCGCCGCCGTTTTCGCGCCGCTTTCCTT
CGCCCAGGTCGAGGATCAGCCCGCCGAAGCAGAAGCCGAACAGAGCGACCTCAAGCTCAACCAGATCGTCGTCACGGCCA
CCCGCCGCGCAACCGATCTTCAGGACACAGCCGTTGCCGTGACCTCCGTCGATGCCGAGTTCATGGCCGAAGCGCGCGTC
GAGAATATCGGCGACATCACCGCCGTTTCGCCCAGCGTGACCTTCCGCAACACGTCCAACCCGGCCACCTCCGCCAACCT
CCAGATCCGCGGCATCGGCACCACCGGCGCCAACCGCGCATTTGAAGGCGCTGTCGGTGTCTTCGTGGACGGCGTTTATC
GCACACGGCCGGGCGCTGCGCTTCAGAACTTCCTGGATGTCGGCAGCCTGCAGGTTCTGCGCGGCCCGCAGGGCACGCTA
TTTGGCAAGAACACGTCTGCTGGCGCTATCCTGCTGGAAAGCTCCACGCCGGTGATCGGCGAAACGGGCGGCGATTACTC
CCTCTCCATCGGCAATTATGAAGCCGTGACAGGCCAGGTCACCGTCAATGCACCGATCGGTGACAAGGCAGCCCTGCGCC
TCTCCGGCATCAGCGCCAACCGTTCGGGTTTCTTCGAAAACCCCAACACCGGCGAAGACTATAACGAGCGCCGCGGCATG
GGCCTCAAAGGGCAGTTCCTTTACGAGCCCACCGACACGCTGCGCCTGCGCATCATCGCCGATCATTCGCGTTCGGACGA
AAACTGCTGCTTCGGTACGGTAGATGCCATTCCCGGCCCTGTGCAGGATGTGGTTGACCAGATCATCCGGGATCGTGGCC
AGGTGCCCACATCGCGCCGCAAGGATGAATACCAGTCGGTGCTGAATATTCCGCCCCGCCAGGTCGTCGAAGACACCGGC
TATACCGTGAAAGCAGACTGGGACGTTGGCCCCGGAAAGCTCTCCTCGGTCACAGCACTTCGTCAGTACAAAGTCGACCA
GATGACCGATGCGGACTTCTCCGGCGCCGATCTTCTCACGCTGAAGGAAAAGTTCAAAAGCAACTTCTTCTCGCAGGAAT
TCAGCTATTCCGGTGACCACCGTTTCGGAGCAGAAGGCAGCGCCGATTATGTCGCCGGCATCTTCTATTCGGACGAGAAG
ATCAATTCCAACCGCACCGCCTGGTGGGGCGAAGACCTTCAGGAAGTCTACAGCTTCACCCTTCCGCCGACTCTGGTGTT
CGACGCCTCCGCCGGCCTGCGCTCGGTGGAAGTCATCGAAGGCAACAACCAGTCCTTCGCCGTCTTCGGCCAGTGGGACG
GCCGCCTGAACGAGAATTGGGGCCTTACCGCCGGTCTGCGCTGGTCGCAGGAAGAAAAGCAGGGTCAGTTCGAAAACCTC
TATTACCGCCCCAATCCTCTGGATGTGTACAAGGTGCTCGGCGTCCAGCCCGCGCCCCACTTCAACACCAGCAAAACCGA
TGAAGCCTTCAGCGGCACGCTCGGCGTCCAGTATCACGTCAACGAAGACGCGATGCTCTATGCCAGCTACAATCGCGGTT
TCAAGGCGGGCGGGGTAAACCTCGACGCCAACGCCGCAGGTGGTTTCCGTCAGAACCCGGACTTCTTCCCTGGCGCGGTT
CCCGGTGATCCGACCTATGATCCGGAATATGTCAACGCCTACGAACTCGGCCTGAAAACCGAATTCTGGGCCAGCCGCGC
CCGCGCCAACTTCTCCGCCTTCTATAACGACATGACAGACCTGCAGGTAGCCCGCTTCGTCGGCACCCAGTTCCAGGTTC
TCAACTCGGCCACCGCCGAGGTCTATGGCGCCGAGGTGGAAAGCGCGTTCGAGCTGACCGAGGACTTCTCGCTGGACGCA
GCCGTCACCTGGCTCTCTCAGGCAGAGCTTGGCGAAGACCCCACGCTTGGCCCTGTTCTTTCAGGCCGCCGCTTCGCGAT
TGCTCCGGAACTTTCCGGCAGCATTGCCCTGCGCATGGATAAGCCCGTCACCGACAGCCTCTCCCTCGTCGGCCGGGTTC
AGACGCAATATTCCGGCGGCTATTACACCGGCAACTCCGACTTCTCCGAGCAGGGCGGCTACGCGCTCACCAACCTGAAC
TTCGGGATCAAATCGGTCGATGGCTGGACGCTGGAAGCTTGGCTGCTGAACGCCTTCGACAAGCGCTACGTCACCAACCA
CTTCTCCACGACGCTGCAGTCGGGAGACGTCAACGCCTATATGAGCGCGCCGCGCACATTCGGGGTCACCCTGCGCGGAT
CATTCTGA

Upstream 100 bases:

>100_bases
GCGCGCCTCTTGGCGGCGATCCCTGTTGCTTTGCCGTGTCTGGCCATCATCCGCGCTTGCCGCCGCCAGCCAATGACACG
TCAGCCCAGGGAGACTTCTC

Downstream 100 bases:

>100_bases
TCAGGCTGACGTTACGTAACCTGCTGCGACTTGCGGTCATCCCTTCCAAAATGGGGTGACCGCAAGTTCATTTCTGAACA
TAAGACCTGCATATTGTTTC

Product: outer membrane receptor (OMR) family protein

Products: NA

Alternate protein names: NB-Dependent Receptor Domain Protein; NB-Dependent Receptor Plug; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug Domain Protein; NB Dependent Receptor; Nb-Dependent Receptor; NB-Dependent Receptor Protein; Outer Membrane Receptor Family Protein; Outer Membrane Protein; Transporter OMR Family; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor For Iron Transport; Receptor -Mostly Fe Transport; NB Dependent Receptor Protein; Ferric-Citrate nB-Dependent Receptor; NB-Dependent Siderophore Receptor

Number of amino acids: Translated: 775; Mature: 775

Protein sequence:

>775_residues
MKKLNCRPLLTGTSALALAAVFAPLSFAQVEDQPAEAEAEQSDLKLNQIVVTATRRATDLQDTAVAVTSVDAEFMAEARV
ENIGDITAVSPSVTFRNTSNPATSANLQIRGIGTTGANRAFEGAVGVFVDGVYRTRPGAALQNFLDVGSLQVLRGPQGTL
FGKNTSAGAILLESSTPVIGETGGDYSLSIGNYEAVTGQVTVNAPIGDKAALRLSGISANRSGFFENPNTGEDYNERRGM
GLKGQFLYEPTDTLRLRIIADHSRSDENCCFGTVDAIPGPVQDVVDQIIRDRGQVPTSRRKDEYQSVLNIPPRQVVEDTG
YTVKADWDVGPGKLSSVTALRQYKVDQMTDADFSGADLLTLKEKFKSNFFSQEFSYSGDHRFGAEGSADYVAGIFYSDEK
INSNRTAWWGEDLQEVYSFTLPPTLVFDASAGLRSVEVIEGNNQSFAVFGQWDGRLNENWGLTAGLRWSQEEKQGQFENL
YYRPNPLDVYKVLGVQPAPHFNTSKTDEAFSGTLGVQYHVNEDAMLYASYNRGFKAGGVNLDANAAGGFRQNPDFFPGAV
PGDPTYDPEYVNAYELGLKTEFWASRARANFSAFYNDMTDLQVARFVGTQFQVLNSATAEVYGAEVESAFELTEDFSLDA
AVTWLSQAELGEDPTLGPVLSGRRFAIAPELSGSIALRMDKPVTDSLSLVGRVQTQYSGGYYTGNSDFSEQGGYALTNLN
FGIKSVDGWTLEAWLLNAFDKRYVTNHFSTTLQSGDVNAYMSAPRTFGVTLRGSF

Sequences:

>Translated_775_residues
MKKLNCRPLLTGTSALALAAVFAPLSFAQVEDQPAEAEAEQSDLKLNQIVVTATRRATDLQDTAVAVTSVDAEFMAEARV
ENIGDITAVSPSVTFRNTSNPATSANLQIRGIGTTGANRAFEGAVGVFVDGVYRTRPGAALQNFLDVGSLQVLRGPQGTL
FGKNTSAGAILLESSTPVIGETGGDYSLSIGNYEAVTGQVTVNAPIGDKAALRLSGISANRSGFFENPNTGEDYNERRGM
GLKGQFLYEPTDTLRLRIIADHSRSDENCCFGTVDAIPGPVQDVVDQIIRDRGQVPTSRRKDEYQSVLNIPPRQVVEDTG
YTVKADWDVGPGKLSSVTALRQYKVDQMTDADFSGADLLTLKEKFKSNFFSQEFSYSGDHRFGAEGSADYVAGIFYSDEK
INSNRTAWWGEDLQEVYSFTLPPTLVFDASAGLRSVEVIEGNNQSFAVFGQWDGRLNENWGLTAGLRWSQEEKQGQFENL
YYRPNPLDVYKVLGVQPAPHFNTSKTDEAFSGTLGVQYHVNEDAMLYASYNRGFKAGGVNLDANAAGGFRQNPDFFPGAV
PGDPTYDPEYVNAYELGLKTEFWASRARANFSAFYNDMTDLQVARFVGTQFQVLNSATAEVYGAEVESAFELTEDFSLDA
AVTWLSQAELGEDPTLGPVLSGRRFAIAPELSGSIALRMDKPVTDSLSLVGRVQTQYSGGYYTGNSDFSEQGGYALTNLN
FGIKSVDGWTLEAWLLNAFDKRYVTNHFSTTLQSGDVNAYMSAPRTFGVTLRGSF
>Mature_775_residues
MKKLNCRPLLTGTSALALAAVFAPLSFAQVEDQPAEAEAEQSDLKLNQIVVTATRRATDLQDTAVAVTSVDAEFMAEARV
ENIGDITAVSPSVTFRNTSNPATSANLQIRGIGTTGANRAFEGAVGVFVDGVYRTRPGAALQNFLDVGSLQVLRGPQGTL
FGKNTSAGAILLESSTPVIGETGGDYSLSIGNYEAVTGQVTVNAPIGDKAALRLSGISANRSGFFENPNTGEDYNERRGM
GLKGQFLYEPTDTLRLRIIADHSRSDENCCFGTVDAIPGPVQDVVDQIIRDRGQVPTSRRKDEYQSVLNIPPRQVVEDTG
YTVKADWDVGPGKLSSVTALRQYKVDQMTDADFSGADLLTLKEKFKSNFFSQEFSYSGDHRFGAEGSADYVAGIFYSDEK
INSNRTAWWGEDLQEVYSFTLPPTLVFDASAGLRSVEVIEGNNQSFAVFGQWDGRLNENWGLTAGLRWSQEEKQGQFENL
YYRPNPLDVYKVLGVQPAPHFNTSKTDEAFSGTLGVQYHVNEDAMLYASYNRGFKAGGVNLDANAAGGFRQNPDFFPGAV
PGDPTYDPEYVNAYELGLKTEFWASRARANFSAFYNDMTDLQVARFVGTQFQVLNSATAEVYGAEVESAFELTEDFSLDA
AVTWLSQAELGEDPTLGPVLSGRRFAIAPELSGSIALRMDKPVTDSLSLVGRVQTQYSGGYYTGNSDFSEQGGYALTNLN
FGIKSVDGWTLEAWLLNAFDKRYVTNHFSTTLQSGDVNAYMSAPRTFGVTLRGSF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84318; Mature: 84318

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLNCRPLLTGTSALALAAVFAPLSFAQVEDQPAEAEAEQSDLKLNQIVVTATRRATDL
CCCCCCCEEECCCHHHHHHHHHHCCHHHHCCCCCCCCCCHHHCCEEEEEEEEEECCCCCC
QDTAVAVTSVDAEFMAEARVENIGDITAVSPSVTFRNTSNPATSANLQIRGIGTTGANRA
CHHEEEEEECCHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCEEEEEEECCCCCCCC
FEGAVGVFVDGVYRTRPGAALQNFLDVGSLQVLRGPQGTLFGKNTSAGAILLESSTPVIG
CCCCCEEEECCEEECCCCHHHHHHHCCCCEEEEECCCCCEEECCCCCCEEEEECCCCEEE
ETGGDYSLSIGNYEAVTGQVTVNAPIGDKAALRLSGISANRSGFFENPNTGEDYNERRGM
CCCCCEEEEECCEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCC
GLKGQFLYEPTDTLRLRIIADHSRSDENCCFGTVDAIPGPVQDVVDQIIRDRGQVPTSRR
CCCCEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
KDEYQSVLNIPPRQVVEDTGYTVKADWDVGPGKLSSVTALRQYKVDQMTDADFSGADLLT
HHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCHHH
LKEKFKSNFFSQEFSYSGDHRFGAEGSADYVAGIFYSDEKINSNRTAWWGEDLQEVYSFT
HHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECHHHHHHHHHCC
LPPTLVFDASAGLRSVEVIEGNNQSFAVFGQWDGRLNENWGLTAGLRWSQEEKQGQFENL
CCCEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHCCCCCCE
YYRPNPLDVYKVLGVQPAPHFNTSKTDEAFSGTLGVQYHVNEDAMLYASYNRGFKAGGVN
EECCCCCCHHHEECCCCCCCCCCCCCCCHHCCCEEEEEEECCCEEEEEECCCCEECCCEE
LDANAAGGFRQNPDFFPGAVPGDPTYDPEYVNAYELGLKTEFWASRARANFSAFYNDMTD
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCHHHHHCCHHH
LQVARFVGTQFQVLNSATAEVYGAEVESAFELTEDFSLDAAVTWLSQAELGEDPTLGPVL
HHHHHHHCCHHEEHHCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC
SGRRFAIAPELSGSIALRMDKPVTDSLSLVGRVQTQYSGGYYTGNSDFSEQGGYALTNLN
CCCEEEECCCCCCCEEEEECCCCCHHHHHHEEEEEEECCCEECCCCCCCCCCCEEEEECC
FGIKSVDGWTLEAWLLNAFDKRYVTNHFSTTLQSGDVNAYMSAPRTFGVTLRGSF
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCC
>Mature Secondary Structure
MKKLNCRPLLTGTSALALAAVFAPLSFAQVEDQPAEAEAEQSDLKLNQIVVTATRRATDL
CCCCCCCEEECCCHHHHHHHHHHCCHHHHCCCCCCCCCCHHHCCEEEEEEEEEECCCCCC
QDTAVAVTSVDAEFMAEARVENIGDITAVSPSVTFRNTSNPATSANLQIRGIGTTGANRA
CHHEEEEEECCHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCEEEEEEECCCCCCCC
FEGAVGVFVDGVYRTRPGAALQNFLDVGSLQVLRGPQGTLFGKNTSAGAILLESSTPVIG
CCCCCEEEECCEEECCCCHHHHHHHCCCCEEEEECCCCCEEECCCCCCEEEEECCCCEEE
ETGGDYSLSIGNYEAVTGQVTVNAPIGDKAALRLSGISANRSGFFENPNTGEDYNERRGM
CCCCCEEEEECCEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCC
GLKGQFLYEPTDTLRLRIIADHSRSDENCCFGTVDAIPGPVQDVVDQIIRDRGQVPTSRR
CCCCEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
KDEYQSVLNIPPRQVVEDTGYTVKADWDVGPGKLSSVTALRQYKVDQMTDADFSGADLLT
HHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCHHH
LKEKFKSNFFSQEFSYSGDHRFGAEGSADYVAGIFYSDEKINSNRTAWWGEDLQEVYSFT
HHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECHHHHHHHHHCC
LPPTLVFDASAGLRSVEVIEGNNQSFAVFGQWDGRLNENWGLTAGLRWSQEEKQGQFENL
CCCEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHCCCCCCE
YYRPNPLDVYKVLGVQPAPHFNTSKTDEAFSGTLGVQYHVNEDAMLYASYNRGFKAGGVN
EECCCCCCHHHEECCCCCCCCCCCCCCCHHCCCEEEEEEECCCEEEEEECCCCEECCCEE
LDANAAGGFRQNPDFFPGAVPGDPTYDPEYVNAYELGLKTEFWASRARANFSAFYNDMTD
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCHHHHHCCHHH
LQVARFVGTQFQVLNSATAEVYGAEVESAFELTEDFSLDAAVTWLSQAELGEDPTLGPVL
HHHHHHHCCHHEEHHCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC
SGRRFAIAPELSGSIALRMDKPVTDSLSLVGRVQTQYSGGYYTGNSDFSEQGGYALTNLN
CCCEEEECCCCCCCEEEEECCCCCHHHHHHEEEEEEECCCEECCCCCCCCCCCEEEEECC
FGIKSVDGWTLEAWLLNAFDKRYVTNHFSTTLQSGDVNAYMSAPRTFGVTLRGSF
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA