| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
Click here to switch to the map view.
The map label for this gene is fyuA [H]
Identifier: 114797247
GI number: 114797247
Start: 2307522
End: 2309858
Strand: Direct
Name: fyuA [H]
Synonym: HNE_2210
Alternate gene names: 114797247
Gene position: 2307522-2309858 (Clockwise)
Preceding gene: 114797204
Following gene: 114798044
Centisome position: 62.28
GC content: 59.35
Gene sequence:
>2337_bases ATGTCTGATATCAATAAACGCATTGCGTCCGGCGCCGGAAAATTCATCCGGACGACATGGCTTGGACATGCGTCTGCGCT TGCCCTGCTTGGCGGTATGGCTCTTCCCGCAATCGCACAGGAAACCACCCCTCCCCCGGCCGCCCAGGAAGCGGATACCC AGGAACCGGCTACGGATGAACTTGCGGTCATGTCTCAGGTCACCGTCACCGCTCAGAGGCGCGCGCAGTCGCTTGGCGAT GTTCCGATTTCGGTGAATGTCGTTTCCGGCGATACGCTGGCCGTTCAGCGGATCAGCAACCTGCAGGATCTCTCGGCCTT TGTGCCAAACCTTACCGTCCCCGAGCGGCCCGGCTCCACCGGCGCCTCGCTGCGCGGGCTTGGCACGGGCGGGCGCAACG CCCTCTTCGACCAGGCCGTCATCGTGCAGGTTGACGGCATCACCAGCGCCCGCTCCGCCCAGTTCACGGTGCCTTATTTT GATGTCGAACGCGTGGAAGTTCTGCGCGGCGCGCAAGGCGTTCTGTTCGGCAAGAACGCCACGGCCGGCGCGATCAATAT CGTGACGGCAAATCCTACAGATACTTTCACCGGCAGCGTGACAGCCGGTTATGAATTCGAAAATCAGGGATATGTCATGG AGGGCTTTGTCGCGGGCCCCCTGACAGAAACCCTCGGCGGGCGCCTTGCGGTCAAGTATGAGCGCGCGGGCGGCTTCATC GAAGACAGGAACCTCGGCGAGGATGCAGGCGAGATTGATACCATCGCCGCGCGCGGAACGCTGCAATGGCGCCCGAACGA CCGGCTGAATGCCCGGTTCAAGATTGATGTCGGCGAAGTCGATGAACGCGGGAACAATATCGAGATCGCCGCCTGCACGT CCAACCTGGCGCGCATCCTCTCCATCTCCCCGACAGAAGACTGCATCATGAACCGCACCTCCGCGCGGTCCTTCATGGAT GAAGACAATACCCGCTCGGCCGCCTTCATTGCAAACATTGACTATGAGATCGGGGATCATACGTTCTCATCGGTTTCCGG CTATTCTCAATATGAACAGAGCACGGCGCGCGATCTGGACGTAACGCCTGTCGAGGCACTCAATCGCTATGTCGACGAGA GCTATGATCAATACTATCAGGAGTTCAGGCTGATCTCTCCTGCAGACGGCCGCCTGACCTATATTCTCGGCGTAACGGGC CAGTTTCAGAATATTGAACTGTCGGATGTTACCGATCTGAATGTCCTCGGCCTTCCCTTTGGCAATTTGTCACCGGCACC TTTCAGTGCCGCCAGCAACCGCCGGTCCATTCAGTTTGCTGATCAGTCCACCGCTTCCTATTCCGCCTTTGCGCACGTCA CCTTTAACGTCACCGATTCTTTCAGGATCCTTGGCGGCGCACGGTATACGGATGAAACAAAGGAAATCGACTATGTCGTG ACACGGGCCTTGTGGGGCACAAATACCCCGGTCGTCACGCCGCTTGATATCGATCTGACGGGCCAGGAACGCAGCGAGTC AAACTTCGATCCCCAGATTGGCGTTCAGTATGATCTGACAGATCGGTTGATGAGCTACTTCACGGCCTCGATCGTGCACA AAGGCGGCGGGTTCAATATCGATGAAACCGACGGCCGGGCTATTGCCGACACCTTTACGTATCAGCCGGAAGAAGCCGAA TCCTATGAAGCGGGGCTCAAATGGTCCGGCCGCGGCAGATATCTCAATCTCGCTGTCTTCCGGACAGATTTCTCGGATCT TCAGGTCGCCAGCAATGATGGCACACGCACCGTGGTCCGCAACGCGGCAGTCGCCCGTTCAGAAGGGGTCGAAGTCGATG GCTTCTGGCAACTTGGCGACTACATCACGCTGGCTGGCGGTCTCGCCTATACCGATGCGACCTTCCTGGAATACCCGGGC GGCTCCTGTACGGCCGCGGCCGCCGCCGCAATTGCGCCCACCCCCTGCGTGGCCGATCTCAGTGGCAACCGGCTGACCTT TGCCCCGGAATGGTCGGGAAATCTTGTGGCCGATGCACGGTTCCCGGTCCGGGACGGCCTGGAGGCAACCCTGGGCGCGA CCCTCAGCTACAGAAGCGACCAGTTCGCCCAGGAAAATAATGATCCGACCCTCGCAATTGATGAGAACACGACCGTGGAT CTGCGCGCCGGGCTGACTACGGAGGATGATCGCAAAAGCATTCGTCTGGTCGCCCGGAACCTGTTCGACGAGACTGTTCC ATCCTTCCTGTTCCCCTTCCCCCGGGCGCCCGGTTCGACCGTGGCGATCTCTCCGCGGGGCCGGTCGGTCCTTCTTGAAC TTTCTTCAAAGTTCTAG
Upstream 100 bases:
>100_bases TCTTGCATACCGTCACCTCTATTTGTAAGCAATTACTCAACAACAAAAGCGGTCACCAACGAGTGTCAGCACCAGCAAAA ACCCAGGGAGGGATCAAACA
Downstream 100 bases:
>100_bases AAACGTCAGAGGCGATAGTGACAAGGACAACAACCATGCGGTGCTTTCTTGCGACACTGTTGACGTGCATGTCGGTTGGC TTGACAGCCGGCTGCGCGTC
Product: outer membrane receptor (OMR) family protein
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 778; Mature: 777
Protein sequence:
>778_residues MSDINKRIASGAGKFIRTTWLGHASALALLGGMALPAIAQETTPPPAAQEADTQEPATDELAVMSQVTVTAQRRAQSLGD VPISVNVVSGDTLAVQRISNLQDLSAFVPNLTVPERPGSTGASLRGLGTGGRNALFDQAVIVQVDGITSARSAQFTVPYF DVERVEVLRGAQGVLFGKNATAGAINIVTANPTDTFTGSVTAGYEFENQGYVMEGFVAGPLTETLGGRLAVKYERAGGFI EDRNLGEDAGEIDTIAARGTLQWRPNDRLNARFKIDVGEVDERGNNIEIAACTSNLARILSISPTEDCIMNRTSARSFMD EDNTRSAAFIANIDYEIGDHTFSSVSGYSQYEQSTARDLDVTPVEALNRYVDESYDQYYQEFRLISPADGRLTYILGVTG QFQNIELSDVTDLNVLGLPFGNLSPAPFSAASNRRSIQFADQSTASYSAFAHVTFNVTDSFRILGGARYTDETKEIDYVV TRALWGTNTPVVTPLDIDLTGQERSESNFDPQIGVQYDLTDRLMSYFTASIVHKGGGFNIDETDGRAIADTFTYQPEEAE SYEAGLKWSGRGRYLNLAVFRTDFSDLQVASNDGTRTVVRNAAVARSEGVEVDGFWQLGDYITLAGGLAYTDATFLEYPG GSCTAAAAAAIAPTPCVADLSGNRLTFAPEWSGNLVADARFPVRDGLEATLGATLSYRSDQFAQENNDPTLAIDENTTVD LRAGLTTEDDRKSIRLVARNLFDETVPSFLFPFPRAPGSTVAISPRGRSVLLELSSKF
Sequences:
>Translated_778_residues MSDINKRIASGAGKFIRTTWLGHASALALLGGMALPAIAQETTPPPAAQEADTQEPATDELAVMSQVTVTAQRRAQSLGD VPISVNVVSGDTLAVQRISNLQDLSAFVPNLTVPERPGSTGASLRGLGTGGRNALFDQAVIVQVDGITSARSAQFTVPYF DVERVEVLRGAQGVLFGKNATAGAINIVTANPTDTFTGSVTAGYEFENQGYVMEGFVAGPLTETLGGRLAVKYERAGGFI EDRNLGEDAGEIDTIAARGTLQWRPNDRLNARFKIDVGEVDERGNNIEIAACTSNLARILSISPTEDCIMNRTSARSFMD EDNTRSAAFIANIDYEIGDHTFSSVSGYSQYEQSTARDLDVTPVEALNRYVDESYDQYYQEFRLISPADGRLTYILGVTG QFQNIELSDVTDLNVLGLPFGNLSPAPFSAASNRRSIQFADQSTASYSAFAHVTFNVTDSFRILGGARYTDETKEIDYVV TRALWGTNTPVVTPLDIDLTGQERSESNFDPQIGVQYDLTDRLMSYFTASIVHKGGGFNIDETDGRAIADTFTYQPEEAE SYEAGLKWSGRGRYLNLAVFRTDFSDLQVASNDGTRTVVRNAAVARSEGVEVDGFWQLGDYITLAGGLAYTDATFLEYPG GSCTAAAAAAIAPTPCVADLSGNRLTFAPEWSGNLVADARFPVRDGLEATLGATLSYRSDQFAQENNDPTLAIDENTTVD LRAGLTTEDDRKSIRLVARNLFDETVPSFLFPFPRAPGSTVAISPRGRSVLLELSSKF >Mature_777_residues SDINKRIASGAGKFIRTTWLGHASALALLGGMALPAIAQETTPPPAAQEADTQEPATDELAVMSQVTVTAQRRAQSLGDV PISVNVVSGDTLAVQRISNLQDLSAFVPNLTVPERPGSTGASLRGLGTGGRNALFDQAVIVQVDGITSARSAQFTVPYFD VERVEVLRGAQGVLFGKNATAGAINIVTANPTDTFTGSVTAGYEFENQGYVMEGFVAGPLTETLGGRLAVKYERAGGFIE DRNLGEDAGEIDTIAARGTLQWRPNDRLNARFKIDVGEVDERGNNIEIAACTSNLARILSISPTEDCIMNRTSARSFMDE DNTRSAAFIANIDYEIGDHTFSSVSGYSQYEQSTARDLDVTPVEALNRYVDESYDQYYQEFRLISPADGRLTYILGVTGQ FQNIELSDVTDLNVLGLPFGNLSPAPFSAASNRRSIQFADQSTASYSAFAHVTFNVTDSFRILGGARYTDETKEIDYVVT RALWGTNTPVVTPLDIDLTGQERSESNFDPQIGVQYDLTDRLMSYFTASIVHKGGGFNIDETDGRAIADTFTYQPEEAES YEAGLKWSGRGRYLNLAVFRTDFSDLQVASNDGTRTVVRNAAVARSEGVEVDGFWQLGDYITLAGGLAYTDATFLEYPGG SCTAAAAAAIAPTPCVADLSGNRLTFAPEWSGNLVADARFPVRDGLEATLGATLSYRSDQFAQENNDPTLAIDENTTVDL RAGLTTEDDRKSIRLVARNLFDETVPSFLFPFPRAPGSTVAISPRGRSVLLELSSKF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=179, Percent_Identity=29.608938547486, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83934; Mature: 83802
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDINKRIASGAGKFIRTTWLGHASALALLGGMALPAIAQETTPPPAAQEADTQEPATDE CCHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHCCHHHCCCCCCCCCCCCCCCCCCCHH LAVMSQVTVTAQRRAQSLGDVPISVNVVSGDTLAVQRISNLQDLSAFVPNLTVPERPGST HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCC GASLRGLGTGGRNALFDQAVIVQVDGITSARSAQFTVPYFDVERVEVLRGAQGVLFGKNA CCCEEECCCCCCCHHCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHCCCCCEEEECCC TAGAINIVTANPTDTFTGSVTAGYEFENQGYVMEGFVAGPLTETLGGRLAVKYERAGGFI CCCEEEEEECCCCCCCCCCEEECEEECCCCEEEEEEECCCHHHHCCCEEEEEECCCCCEE EDRNLGEDAGEIDTIAARGTLQWRPNDRLNARFKIDVGEVDERGNNIEIAACTSNLARIL ECCCCCCCCCCEEEEEECCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHHHE SISPTEDCIMNRTSARSFMDEDNTRSAAFIANIDYEIGDHTFSSVSGYSQYEQSTARDLD ECCCCHHHHHCCHHHHHHHCCCCCCCEEEEEEECEECCCCCHHHCCCHHHHHHHHCCCCC VTPVEALNRYVDESYDQYYQEFRLISPADGRLTYILGVTGQFQNIELSDVTDLNVLGLPF CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEECCCCCCEEECCCCCCEEEECCC GNLSPAPFSAASNRRSIQFADQSTASYSAFAHVTFNVTDSFRILGGARYTDETKEIDYVV CCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCCHHHHHHE TRALWGTNTPVVTPLDIDLTGQERSESNFDPQIGVQYDLTDRLMSYFTASIVHKGGGFNI EHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC DETDGRAIADTFTYQPEEAESYEAGLKWSGRGRYLNLAVFRTDFSDLQVASNDGTRTVVR CCCCCCEEEEEECCCCCCCCHHHCCCEECCCCCEEEEEEEEECCCCEEEECCCCCCHHHH NAAVARSEGVEVDGFWQLGDYITLAGGLAYTDATFLEYPGGSCTAAAAAAIAPTPCVADL HHHHHHCCCCCCCEEEECCCEEEEECCEEECCCEEEECCCCCCHHHHHHHCCCCCEEEEC SGNRLTFAPEWSGNLVADARFPVRDGLEATLGATLSYRSDQFAQENNDPTLAIDENTTVD CCCEEEECCCCCCCEEEECCCCCCCCCHHHHCCEEECCCCHHHHCCCCCEEEECCCCEEE LRAGLTTEDDRKSIRLVARNLFDETVPSFLFPFPRAPGSTVAISPRGRSVLLELSSKF EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEECCC >Mature Secondary Structure SDINKRIASGAGKFIRTTWLGHASALALLGGMALPAIAQETTPPPAAQEADTQEPATDE CHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHCCHHHCCCCCCCCCCCCCCCCCCCHH LAVMSQVTVTAQRRAQSLGDVPISVNVVSGDTLAVQRISNLQDLSAFVPNLTVPERPGST HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCC GASLRGLGTGGRNALFDQAVIVQVDGITSARSAQFTVPYFDVERVEVLRGAQGVLFGKNA CCCEEECCCCCCCHHCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHCCCCCEEEECCC TAGAINIVTANPTDTFTGSVTAGYEFENQGYVMEGFVAGPLTETLGGRLAVKYERAGGFI CCCEEEEEECCCCCCCCCCEEECEEECCCCEEEEEEECCCHHHHCCCEEEEEECCCCCEE EDRNLGEDAGEIDTIAARGTLQWRPNDRLNARFKIDVGEVDERGNNIEIAACTSNLARIL ECCCCCCCCCCEEEEEECCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHHHE SISPTEDCIMNRTSARSFMDEDNTRSAAFIANIDYEIGDHTFSSVSGYSQYEQSTARDLD ECCCCHHHHHCCHHHHHHHCCCCCCCEEEEEEECEECCCCCHHHCCCHHHHHHHHCCCCC VTPVEALNRYVDESYDQYYQEFRLISPADGRLTYILGVTGQFQNIELSDVTDLNVLGLPF CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEECCCCCCEEECCCCCCEEEECCC GNLSPAPFSAASNRRSIQFADQSTASYSAFAHVTFNVTDSFRILGGARYTDETKEIDYVV CCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCCHHHHHHE TRALWGTNTPVVTPLDIDLTGQERSESNFDPQIGVQYDLTDRLMSYFTASIVHKGGGFNI EHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC DETDGRAIADTFTYQPEEAESYEAGLKWSGRGRYLNLAVFRTDFSDLQVASNDGTRTVVR CCCCCCEEEEEECCCCCCCCHHHCCCEECCCCCEEEEEEEEECCCCEEEECCCCCCHHHH NAAVARSEGVEVDGFWQLGDYITLAGGLAYTDATFLEYPGGSCTAAAAAAIAPTPCVADL HHHHHHCCCCCCCEEEECCCEEEEECCEEECCCEEEECCCCCCHHHHHHHCCCCCEEEEC SGNRLTFAPEWSGNLVADARFPVRDGLEATLGATLSYRSDQFAQENNDPTLAIDENTTVD CCCEEEECCCCCCCEEEECCCCCCCCCHHHHCCEEECCCCHHHHCCCCCEEEECCCCEEE LRAGLTTEDDRKSIRLVARNLFDETVPSFLFPFPRAPGSTVAISPRGRSVLLELSSKF EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA