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The map label for this gene is ydhC [H]

Identifier: 114797204

GI number: 114797204

Start: 2302532

End: 2303299

Strand: Direct

Name: ydhC [H]

Synonym: HNE_2206

Alternate gene names: 114797204

Gene position: 2302532-2303299 (Clockwise)

Preceding gene: 114797470

Following gene: 114797247

Centisome position: 62.15

GC content: 63.41

Gene sequence:

>768_bases
ATGTCAACCGTCGTTGAAAAAGTTACCCTTCATCTGCGGGACATGATCATGAGCGGTCAGTTCGAACCGGGTGAGCGGAT
TTCTGAAGTTGGCGTTGCCAGAACCCTGGATGTCTCCCGCACGCCCGTCCGCTGGGCTCTGAGCATCCTCGAAACCGAAG
GCCTGGTGAGTGGCACCCCCAACAAAGGGTTTCGCCTGAGAACGTTCACCCCCGAAGAAGTCCTCTCCGCTTACGAGGTT
CGCGGCGCGCTTGAGGGCCTTGCCTGCCGGCTTGCCGCGCAGAGAGGCCTGTCGGCTGAAGCAGCGGCCGAATTTGATGC
CTGCCTGGCAGAAGGCGAAGCGTTGATCAGCAATACCAAACTCGACGAGCACACGGTCAAACGCTGGAGCGCCATGAACG
GGCGCTTCCACACGGCGCTGCTCGATGCGGCGCACTGCCCGGCGATTGAACCGGCCTATGAGGCCGTGTCGCGCTACCCC
GCAGCCGCCCCCGGCGCCATCATGTTCCTGACACGGAACCTGCGCGCCGGATTCAGCGCCATGAAGCGCGCACACGAACA
GCATGTTGCGGTGGTCGACGCTCTCAAGGCGGGCCAGCCCATGCGCGCAGAATACCTGATCCGCGAGCATATCGACAGTT
CCGGCGCGAATGTGAGAGTGGCCCTTCAACGCGAACAGGCCGAAGCCTCCGCCCAGGGCTCTGCCGGGCCCGCAACCCGG
CGGACAAGGCGCAGCCGCGCGAAGGCAGCTGCCAGATCAAAGAACTGA

Upstream 100 bases:

>100_bases
CCCGGCCTTGCTTTGCATCCCCTGAAGAACCGGCTATTCCTCTAAAATGCCATCCGGCAGTGCTCGCAAAGTCGGCGCAA
AACCAGTCTTGAGGCCTGAA

Downstream 100 bases:

>100_bases
TGTCAGACACGCCCCGCTGCAGCCCCTTCACATAACCTCAAACCTGATCGGCAGCGTCTTGGGGCCGCTGACGAAATAGC
TCTCGACAAACTTTATATCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSTVVEKVTLHLRDMIMSGQFEPGERISEVGVARTLDVSRTPVRWALSILETEGLVSGTPNKGFRLRTFTPEEVLSAYEV
RGALEGLACRLAAQRGLSAEAAAEFDACLAEGEALISNTKLDEHTVKRWSAMNGRFHTALLDAAHCPAIEPAYEAVSRYP
AAAPGAIMFLTRNLRAGFSAMKRAHEQHVAVVDALKAGQPMRAEYLIREHIDSSGANVRVALQREQAEASAQGSAGPATR
RTRRSRAKAAARSKN

Sequences:

>Translated_255_residues
MSTVVEKVTLHLRDMIMSGQFEPGERISEVGVARTLDVSRTPVRWALSILETEGLVSGTPNKGFRLRTFTPEEVLSAYEV
RGALEGLACRLAAQRGLSAEAAAEFDACLAEGEALISNTKLDEHTVKRWSAMNGRFHTALLDAAHCPAIEPAYEAVSRYP
AAAPGAIMFLTRNLRAGFSAMKRAHEQHVAVVDALKAGQPMRAEYLIREHIDSSGANVRVALQREQAEASAQGSAGPATR
RTRRSRAKAAARSKN
>Mature_254_residues
STVVEKVTLHLRDMIMSGQFEPGERISEVGVARTLDVSRTPVRWALSILETEGLVSGTPNKGFRLRTFTPEEVLSAYEVR
GALEGLACRLAAQRGLSAEAAAEFDACLAEGEALISNTKLDEHTVKRWSAMNGRFHTALLDAAHCPAIEPAYEAVSRYPA
AAPGAIMFLTRNLRAGFSAMKRAHEQHVAVVDALKAGQPMRAEYLIREHIDSSGANVRVALQREQAEASAQGSAGPATRR
TRRSRAKAAARSKN

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=203, Percent_Identity=26.1083743842365, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27636; Mature: 27505

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVVEKVTLHLRDMIMSGQFEPGERISEVGVARTLDVSRTPVRWALSILETEGLVSGTP
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
NKGFRLRTFTPEEVLSAYEVRGALEGLACRLAAQRGLSAEAAAEFDACLAEGEALISNTK
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCC
LDEHTVKRWSAMNGRFHTALLDAAHCPAIEPAYEAVSRYPAAAPGAIMFLTRNLRAGFSA
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MKRAHEQHVAVVDALKAGQPMRAEYLIREHIDSSGANVRVALQREQAEASAQGSAGPATR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHCCCCCCCHHH
RTRRSRAKAAARSKN
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
STVVEKVTLHLRDMIMSGQFEPGERISEVGVARTLDVSRTPVRWALSILETEGLVSGTP
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
NKGFRLRTFTPEEVLSAYEVRGALEGLACRLAAQRGLSAEAAAEFDACLAEGEALISNTK
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCC
LDEHTVKRWSAMNGRFHTALLDAAHCPAIEPAYEAVSRYPAAAPGAIMFLTRNLRAGFSA
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MKRAHEQHVAVVDALKAGQPMRAEYLIREHIDSSGANVRVALQREQAEASAQGSAGPATR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHCCCCCCCHHH
RTRRSRAKAAARSKN
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]