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The map label for this gene is ycfQ [H]

Identifier: 114797233

GI number: 114797233

Start: 1045089

End: 1045685

Strand: Reverse

Name: ycfQ [H]

Synonym: HNE_1035

Alternate gene names: 114797233

Gene position: 1045685-1045089 (Counterclockwise)

Preceding gene: 114799231

Following gene: 114798375

Centisome position: 28.22

GC content: 65.33

Gene sequence:

>597_bases
ATGGGACGCCATCGCGAATTTGATGTGGAGAAGGCGCTGGATGCGGCGCTGTGTGTCTTCTGGCGGAAGGGCTATGAAGG
CGCGACCTATTCGGACCTGACCGAAGCCACCGGCGTGGAGCGGCCAGCCCTCTATTCCGCCTTCGGCAACAAGGAAGCGT
TCTTCCGGAAGGCGCTGGATCGCTATCAGGACCGGTATCTCGATTACTTCCCCGAAGCGATGAACCTGCCGACCGCGCGG
GAAGCGGCGGCGCGGGTCTTCTGCGCGGCCATCGACCTGAACACAGCGTTTCCGGAAAACCCCGGATGCCTGATGGTCAA
CAGCGCGCAGGCGGGGTCTGATGACGCGGAACCGGTGAGGCAGGCGTTGATCGATGCGCGGGCGACGGGCGAGGCGATGC
TGCGGGACCGCTTCATGCAAGCCCGGAAAGACGGCGATCTGCCCGAAACATCCAACCCCGAAGCGCTCGCCGCATTCGTG
ATGGCTGTGCTGCACGGGATGGCCGTGCAGGCGAAGGCGGGCTTCAGCCGCGAGGCGCTGAGGGCCGTTGCCGAACAGGC
GCTGAGCGCATTTCCGCCGGGCAAACCCGCAGGCTGA

Upstream 100 bases:

>100_bases
CTTTGTTTTTTCATAACGATTGTTATTATAACGTCAGTTATGGTATCGGAAGCGAAGTTCAAGATATTTCGTAACGGTTG
TTACAAAAAAGGAAACGCTG

Downstream 100 bases:

>100_bases
GGCTTGTAGAGAAGGCCTTGTATGGGGGCGCGGAAGCCCGCATCTTGGGAACATGACCCAATCTCCCCTGCCCTTTGACC
TGACAGCCGCTTCCGCCATC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MGRHREFDVEKALDAALCVFWRKGYEGATYSDLTEATGVERPALYSAFGNKEAFFRKALDRYQDRYLDYFPEAMNLPTAR
EAAARVFCAAIDLNTAFPENPGCLMVNSAQAGSDDAEPVRQALIDARATGEAMLRDRFMQARKDGDLPETSNPEALAAFV
MAVLHGMAVQAKAGFSREALRAVAEQALSAFPPGKPAG

Sequences:

>Translated_198_residues
MGRHREFDVEKALDAALCVFWRKGYEGATYSDLTEATGVERPALYSAFGNKEAFFRKALDRYQDRYLDYFPEAMNLPTAR
EAAARVFCAAIDLNTAFPENPGCLMVNSAQAGSDDAEPVRQALIDARATGEAMLRDRFMQARKDGDLPETSNPEALAAFV
MAVLHGMAVQAKAGFSREALRAVAEQALSAFPPGKPAG
>Mature_197_residues
GRHREFDVEKALDAALCVFWRKGYEGATYSDLTEATGVERPALYSAFGNKEAFFRKALDRYQDRYLDYFPEAMNLPTARE
AAARVFCAAIDLNTAFPENPGCLMVNSAQAGSDDAEPVRQALIDARATGEAMLRDRFMQARKDGDLPETSNPEALAAFVM
AVLHGMAVQAKAGFSREALRAVAEQALSAFPPGKPAG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=196, Percent_Identity=34.1836734693878, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21591; Mature: 21459

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRHREFDVEKALDAALCVFWRKGYEGATYSDLTEATGVERPALYSAFGNKEAFFRKALD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHH
RYQDRYLDYFPEAMNLPTAREAAARVFCAAIDLNTAFPENPGCLMVNSAQAGSDDAEPVR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHH
QALIDARATGEAMLRDRFMQARKDGDLPETSNPEALAAFVMAVLHGMAVQAKAGFSREAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RAVAEQALSAFPPGKPAG
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GRHREFDVEKALDAALCVFWRKGYEGATYSDLTEATGVERPALYSAFGNKEAFFRKALD
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHH
RYQDRYLDYFPEAMNLPTAREAAARVFCAAIDLNTAFPENPGCLMVNSAQAGSDDAEPVR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHH
QALIDARATGEAMLRDRFMQARKDGDLPETSNPEALAAFVMAVLHGMAVQAKAGFSREAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RAVAEQALSAFPPGKPAG
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]