| Definition | Nitrosomonas eutropha C91, complete genome. |
|---|---|
| Accession | NC_008344 |
| Length | 2,661,057 |
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The map label for this gene is rne [H]
Identifier: 114331691
GI number: 114331691
Start: 1806079
End: 1808628
Strand: Direct
Name: rne [H]
Synonym: Neut_1707
Alternate gene names: 114331691
Gene position: 1806079-1808628 (Clockwise)
Preceding gene: 114331689
Following gene: 114331694
Centisome position: 67.87
GC content: 50.35
Gene sequence:
>2550_bases ATGAAACGCATGTTATTCAACGCGACCCAGCCCGAAGAGCTGCGTGTTGCTATTGTAGATGGGCAGAAGCTCATTGATAT TGATATTGAAACCCTGGGCAAGGAACAACGCAAAAGCAATATTTATAAAGCTGCTGTTACCCGCCTTGAACCAAGCCTTG AAGCGGCTTTTGTTGATTATGGCGCCGGGCGCCATGGTTTTTTACCCTATAAGGAGATCGCTCCCACCTGTTTTGACAAA AATACCGAACGATCCAGTCACCGTATCGGTGAACTACTGCGCGAAGGCCAGGAGCTGATTGTACAGGTTGACAAGGATGA ACGCGGAAATAAAGGTGCTGCGCTCACCACCTATATCTCACTGGCTGGTCGTTACCTTGTTCTGATGCCCAACAACCCGC AAGGGGGAGGTATTTCACGCCGTGTCAGTGCGGAAGAACGGGCAGAACTGCGTGAAGTAATCAACCATCTTCAGGTGCCC GATGGCATGAGTATCATTGCGCGTACCGCTGGTATTGGGCGCAACGAAGAGGAATTGCAGTGGGATTTGAACTATCTGGT GCAACTCTGGCGTGCAATCGAGGGAGCAGCCAGTAGTGAGCGTGGTGTCTTTCTGATTTATCAGGAAAGCAGTCTCGTAA TTCGCGCCATTCGTGATTATTTCCATGCGGAAATCGGCGAAATTCTGATTGATAACCCTGAAATATATGAGCAGGCATAC CAGTTCATGGCCAATGTCATGCCGGCAAACGTTGACCGGCTAAAGCTCTACCAGGACGATATTCCTCTGTTTTCTCGTTT TCAGATTGAGCACCAGATTGAAACAGCCTATTCTCGCCAGGTCACACTGCCTTCCGGTGGCTCGATTGTGATTGATCATA CCGAGGCACTGGTTTCAATTGACGTTAACTCGGCGCGCGCCATACGTGGCTCTGATATAGAAAACACTGCACTCAACACC AATCTGGAGGCTGCTGACGAAATCGCCCGGCAATTGCGTTTGCGCGACCTGGGAGGCTTGGTGGTCGTTGATTTTATCGA TATGGAAGTCACCCGCAATCAGCGGGAAGTGGAAACCAACCTGCTGAAGGCATTGCGCCTGGATCGTGCGCGCGTCCAGA TCGGCAAAATTTCCCGTTTCGGATTGCTGGAATTATCCCGTCAGCGTCTGCGGCCTTCTCTCGGGGAAGGCAACTACATC CCCTGCCCTCGCTGTCATGGTACCGGCCATATCCGGGGAACAGATTCATCTGCGCTGCACATACTCAGAATTATCCAAGA AGAAGCCATGAAGGAGCAGACTAGCATGCTGCAGGTGCAGTTGCCGGTTGATGTCGCCACATTCCTGCTGAATGAAAAAC GATCAGAAATATACCGGCTTGAAGCACGCCTGAAAGTTGGCATCATCCTGATCCCCAATATCTACATGGAGACACCCAAC TACACGATTAACCGGCTGCGTCATGAGGATGTCAAATCAACAGAATTGCCGCCAAGCTATGGAATGGTGGAGAAAACCAC TGAAGAAATCACACTGCCATCTACTTCACAAGAACTCAAGGCAATCCGGCCAAAAGCTGCCGTAACTGGTATCAAACCCG AACAACCCGCACCAGTCCCAGAAGAAAAACCCCGGGAACAACTTTCATTCCTGGACAAATTTTTCAGTCTGTTCAGACCG GCAAGCAGCAGTCGGGTAGAACCTGAACAGACAGCAGAGGAGTCCCAAGCTAGACCTCTCCGTAGCGAACGAGGCCGAAA CAGGCGCGATCGAGGTCGCAACAAGCGTACAAAAAACAATATTCCGGGAACAACAGCAAGCGAGACATTACAGGAGGCAG GCAATCTGCCGTCACTTGAACAATCAACTGGACATCCCGTTGAAAGCACGAGCAACGATGATCATCATCATAAAGCCAGC CGGCAAGGGCAAGATCAGTTACAAGAATCGGGAGCGGAAAGTAATCTGCCTGATGCAACGACAACCGGAGAAGGCACAAC GCCTGCAGGGGATTCTGTCAGTGAAAGAAAAACAGATAGGAGAGGCCGTTCACGCCGTCGTCGTGGAGGTCTGCATCGTG ATCGGGAAGAGCGGACAGATGCAAATAAAACCACTGAACAGGGAGAGGTAACCCAGATTACAAGCAGTGAAAATAATGAG CCAGTTGTACCTTCTGCTGATGGCAAGGAAGATAGGGAGCTTTCATTCCTGCCCCCCACAGAACCGACTCAGCATATTAC GTCGATAGCATCAGTCGACGATATTACAGCAGAGCAGGAAGTGGCCTCTGCCAAGGTAATCGAGCCAATAAATACCGATG CTGAATCAAATACTGGATCACAGGCTGCTTCGGAATCCCGTCAGCCAATCGAACTACCTGATCTCACCCAAAGTGGACTG GTCATGATAGAAACAGCCCCGGATAAAATAGCCGAAGTACCAGAGGAAGCCTTGGCACCAGTCAAAAGGCCGCGTATCAG ACCCAGCTACTTAGCGGAACCGGATACAACAAGTTCTGAACCTCTGGTACAAATAGAAACCAGAGATTGA
Upstream 100 bases:
>100_bases CCAACACTCTGGCCACAGACAAATCTGTGCAAAAATACCAGGATGCCACACTGACAGTGAACGAAAGGTTTACCCGTACA CCGAGCGCGGGAGACACTAA
Downstream 100 bases:
>100_bases TACGCAACAGCTAAATGGCACTTTTAAAATAAGTGTGTCTATGATGACGAACGCGCCGACTGTAATAGTTAGCGTGTCCG TCATTGTGCGGCCCATAAGA
Product: ribonuclease, Rne/Rng family protein
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAGRHGFLPYKEIAPTCFDK NTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVP DGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAIRGSDIENTALNT NLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYI PCPRCHGTGHIRGTDSSALHILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVPEEKPREQLSFLDKFFSLFRP ASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKAS RQGQDQLQESGAESNLPDATTTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGSQAASESRQPIELPDLTQSGL VMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQIETRD
Sequences:
>Translated_849_residues MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAGRHGFLPYKEIAPTCFDK NTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVP DGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAIRGSDIENTALNT NLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYI PCPRCHGTGHIRGTDSSALHILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVPEEKPREQLSFLDKFFSLFRP ASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKAS RQGQDQLQESGAESNLPDATTTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGSQAASESRQPIELPDLTQSGL VMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQIETRD >Mature_849_residues MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAGRHGFLPYKEIAPTCFDK NTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVP DGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAIRGSDIENTALNT NLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYI PCPRCHGTGHIRGTDSSALHILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVPEEKPREQLSFLDKFFSLFRP ASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKAS RQGQDQLQESGAESNLPDATTTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGSQAASESRQPIELPDLTQSGL VMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQIETRD
Specific function: Matures 5S rRNA from its precursors from all the rRNA genes. Major endoribonuclease participating in mRNA turnover. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic proce
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787325, Length=531, Percent_Identity=59.1337099811676, Blast_Score=623, Evalue=1e-179, Organism=Escherichia coli, GI87082235, Length=427, Percent_Identity=37.9391100702576, Blast_Score=252, Evalue=8e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR021968 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF12111 PNPase_C; PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 94900; Mature: 94900
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDY CCCCCCCCCCCCCEEEEEECCCEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHC GAGRHGFLPYKEIAPTCFDKNTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYIS CCCCCCCCCHHHHCCHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH LAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVPDGMSIIARTAGIGRNEEELQ HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH WDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY HHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSI HHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCEEEEE DVNSARAIRGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETN ECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHH LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH ILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN HHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEECCC YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVP HHHHHHHHHCCCCCCCCCCCCCHHHCHHHEECCCCHHHHHHHCCHHHCCCCCCCCCCCCC EEKPREQLSFLDKFFSLFRPASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNN CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCC IPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKASRQGQDQLQESGAESNLPDAT CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC TTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGS CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC QAASESRQPIELPDLTQSGLVMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSE HHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCC PLVQIETRD CEEEEECCC >Mature Secondary Structure MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDY CCCCCCCCCCCCCEEEEEECCCEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHC GAGRHGFLPYKEIAPTCFDKNTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYIS CCCCCCCCCHHHHCCHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH LAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVPDGMSIIARTAGIGRNEEELQ HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH WDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY HHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSI HHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCEEEEE DVNSARAIRGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETN ECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHH LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH ILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN HHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEECCC YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVP HHHHHHHHHCCCCCCCCCCCCCHHHCHHHEECCCCHHHHHHHCCHHHCCCCCCCCCCCCC EEKPREQLSFLDKFFSLFRPASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNN CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCC IPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKASRQGQDQLQESGAESNLPDAT CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC TTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGS CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC QAASESRQPIELPDLTQSGLVMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSE HHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCC PLVQIETRD CEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]