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The map label for this gene is ccmH [H]

Identifier: 114331622

GI number: 114331622

Start: 1721390

End: 1721905

Strand: Reverse

Name: ccmH [H]

Synonym: Neut_1636

Alternate gene names: 114331622

Gene position: 1721905-1721390 (Counterclockwise)

Preceding gene: 114331623

Following gene: 114331621

Centisome position: 64.71

GC content: 40.89

Gene sequence:

>516_bases
ATGATGAAACAACTGATCTGTATGAGAGTGGACTCGTTAAAGCGTTGCTTAATGGTGATTATTCTGTCTCTTATAGCTTT
CCAGGGCTATGCAAATGAAGCCCCACCTGTCGCCGATGATCCTGAACTTGAGAGTCGGTTGAATAATTTGGCAGAGAATC
TACGCTGTTTGGTGTGTCAGAATGAAACACTAGCTGCATCACATGCTGATTTTGCTAAGGATATGAGGCGTGAAATCAGA
GAACAGATGCGAATGAATAAAAGTGATGAGGAAATTGTAGATTTTTTAGTAGCTCGCTACGGAGATTTCATTCTTTTCAA
CCCTCCCTTTAAATCAATAACATGGTTGTTGTGGCTCGGTCCGTTCACTTTGTTTTTGGGGGGTGGTTCTGCGCTCATTT
TTTATTTGAGGCGTCGTCGTATTCGAATAAAGGAAAACGAGGTACCACTGACAGAAAATCAGCGTTTACAGGCTGAATCT
CTTATTAAAGAAATGGACAAGGATCAAAGTATATGA

Upstream 100 bases:

>100_bases
CAAGGCATTATCAGGTATAAGCATATTGGCCCGGTAACGGTTGAATCACTGAAAGATAAAATTCTTCCTTTAATCAAGGA
ACTGAAGAGTTGAGTTGGTA

Downstream 100 bases:

>100_bases
CGACGGTATTTTGGGTTATAGTCGGTATATTTATCATGGCAGCATTGCTGTTTATTATACCTGTATTGCTGAGAAATAAA
AAAAACGAGCTTCAAGATCA

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MMKQLICMRVDSLKRCLMVIILSLIAFQGYANEAPPVADDPELESRLNNLAENLRCLVCQNETLAASHADFAKDMRREIR
EQMRMNKSDEEIVDFLVARYGDFILFNPPFKSITWLLWLGPFTLFLGGGSALIFYLRRRRIRIKENEVPLTENQRLQAES
LIKEMDKDQSI

Sequences:

>Translated_171_residues
MMKQLICMRVDSLKRCLMVIILSLIAFQGYANEAPPVADDPELESRLNNLAENLRCLVCQNETLAASHADFAKDMRREIR
EQMRMNKSDEEIVDFLVARYGDFILFNPPFKSITWLLWLGPFTLFLGGGSALIFYLRRRRIRIKENEVPLTENQRLQAES
LIKEMDKDQSI
>Mature_171_residues
MMKQLICMRVDSLKRCLMVIILSLIAFQGYANEAPPVADDPELESRLNNLAENLRCLVCQNETLAASHADFAKDMRREIR
EQMRMNKSDEEIVDFLVARYGDFILFNPPFKSITWLLWLGPFTLFLGGGSALIFYLRRRRIRIKENEVPLTENQRLQAES
LIKEMDKDQSI

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=95, Percent_Identity=41.0526315789474, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1790512, Length=66, Percent_Identity=39.3939393939394, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 19886; Mature: 19886

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKQLICMRVDSLKRCLMVIILSLIAFQGYANEAPPVADDPELESRLNNLAENLRCLVCQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEC
NETLAASHADFAKDMRREIREQMRMNKSDEEIVDFLVARYGDFILFNPPFKSITWLLWLG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH
PFTLFLGGGSALIFYLRRRRIRIKENEVPLTENQRLQAESLIKEMDKDQSI
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMKQLICMRVDSLKRCLMVIILSLIAFQGYANEAPPVADDPELESRLNNLAENLRCLVCQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEC
NETLAASHADFAKDMRREIREQMRMNKSDEEIVDFLVARYGDFILFNPPFKSITWLLWLG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH
PFTLFLGGGSALIFYLRRRRIRIKENEVPLTENQRLQAESLIKEMDKDQSI
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]