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The map label for this gene is yjfH [C]

Identifier: 114331617

GI number: 114331617

Start: 1715543

End: 1716379

Strand: Reverse

Name: yjfH [C]

Synonym: Neut_1631

Alternate gene names: 114331617

Gene position: 1716379-1715543 (Counterclockwise)

Preceding gene: 114331618

Following gene: 114331615

Centisome position: 64.5

GC content: 47.55

Gene sequence:

>837_bases
ATGCAGATCACAAGCAACATGCGCCGTATAACCTCTCGCGAGCATCCCGTATTTAAAAAGCTGTTCAAGCTGCAACGTTC
GTCACGGCAGCGCCGTGACGATGGACTTGCTTTGCTTGATGGCATCCATTTGTTGCAGTCTTATCTTGCTTCAGGAAGAA
TTCCGGAATTGCTGATCGTTAGCGAATCAGGAGGCCAACATGCTGAAATTAATCAGCTGCTAGGTAGTATTGGTAAAGAT
TTTGGAAGAGCTGATTGTCTAATGTTGAGTGATGCGCTATTCAACCAGATATCGCTAGTCAAAACACCGGTTGGTATTAT
GACACTCGTTCGTATTCCCCGGCATACCCGGTCTGTTGACTCCTATGAAGATTCTTTTTGCATCGCGCTGGAAGCTATTC
AGGATCCAGGTAATCTGGGTTCGATTCTGCGTTCTGCGGTTGCTGCGGGTGTTAAAGATGCGTTCCTGTCTAGTGATTGT
GCTGATAGCTGGTCGCCCAAAACATTAAGAGCCGGTATGGGGGCGCATTTTTCTTTGAGAATTCATGAAGATTCCGATCT
GATCCAGATTGCTTGTCAATTTAATGGAAATGTTATAGCGACGGCACTGGCTGGCGCTGACAATATTTATCATACAGACC
TGCGAGGGCCGGTCATGTTTGCTTTCGGTAATGAGGGGTGCGGTGTATCAGAAGAGCTGCTAGAAGTTGTGCGTGAACGT
GTGGCAATACCCATGCCAGGGTGTGCCGAATCACTCAACGTTGCTGCGGCTGCTGCAATCTGTTTATTCGAGAAAATCCG
GCAGGAGAATTCTGGTGAGAGTTACTCGCAAGAGTGA

Upstream 100 bases:

>100_bases
AGGTGGTTTTGAGGATGAGGGGAGAACAGCAATCCTGAAACGTTTGTTTCTCTCGTTATGTTCTTGACAGTATTCCGTAT
CAATCCGTAGCCAAAGTAAC

Downstream 100 bases:

>100_bases
TAAATGCTATTCCGCTTAGTGCCTGTGATACGTCAGTAATACTCCTTATTTTCTCGCGGAATTGGAAATTCAGGGTGACA
AAGTAAAAACTCAGAATTGT

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MQITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIVSESGGQHAEINQLLGSIGKD
FGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVDSYEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDC
ADSWSPKTLRAGMGAHFSLRIHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVRER
VAIPMPGCAESLNVAAAAAICLFEKIRQENSGESYSQE

Sequences:

>Translated_278_residues
MQITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIVSESGGQHAEINQLLGSIGKD
FGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVDSYEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDC
ADSWSPKTLRAGMGAHFSLRIHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVRER
VAIPMPGCAESLNVAAAAAICLFEKIRQENSGESYSQE
>Mature_278_residues
MQITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIVSESGGQHAEINQLLGSIGKD
FGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVDSYEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDC
ADSWSPKTLRAGMGAHFSLRIHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVRER
VAIPMPGCAESLNVAAAAAICLFEKIRQENSGESYSQE

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=297, Percent_Identity=27.9461279461279, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1790623, Length=175, Percent_Identity=30.2857142857143, Blast_Score=79, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24666840, Length=284, Percent_Identity=26.056338028169, Blast_Score=74, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30251; Mature: 30251

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIV
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE
SESGGQHAEINQLLGSIGKDFGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVD
ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCC
SYEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSLR
CCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEE
IHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVRER
EECCCCEEEEEEEECCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
VAIPMPGCAESLNVAAAAAICLFEKIRQENSGESYSQE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIV
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE
SESGGQHAEINQLLGSIGKDFGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVD
ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCC
SYEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSLR
CCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEE
IHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVRER
EECCCCEEEEEEEECCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
VAIPMPGCAESLNVAAAAAICLFEKIRQENSGESYSQE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]