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The map label for this gene is secF [H]

Identifier: 114331423

GI number: 114331423

Start: 1515675

End: 1516607

Strand: Direct

Name: secF [H]

Synonym: Neut_1434

Alternate gene names: 114331423

Gene position: 1515675-1516607 (Clockwise)

Preceding gene: 114331422

Following gene: 114331424

Centisome position: 56.96

GC content: 44.16

Gene sequence:

>933_bases
ATGGATTTTTTCAGATTCGAACGCGATATTCCTTTTACTCGCTGGGGAAAATTATCAATGACTTTTTCCCTGATCATCTC
CATCCTGGCGATTTATTCTCTCGTCACAAAGGGATTGAATCTTGCAGTAGATTTTACTGGCGGCACCGTGATGGAAATCA
GCTACCAACAGCCTGCTGATCTCGATAAAACCCGCAAAGTCCTTGCCAGCATCGGAATGCCTGATGCAATTGTGCAGAAT
TTCGGGACATCCCGGGATGTCATCATCAGACTTCCTGTCAAGGCAGAACACACCGGGGGCAATTTGTCCGAGACTGTTAT
GACAGCGCTCAAAAAGGATGATCCCTCAGTTGAAATGAGGCGGGTGGAATTCGTAGGTCCGCAGGTTGGAGATGAGTTAT
TGGAAAATGGCTTGCTGGCAATGCTGTTTGTTTCCATGGGCATAGTTGCCTATCTGGCTTTCCGATTTGAATGGAAATTT
GGTGTTTCTTGTATTATTGCCAACCTGCATGACGTATTAATTATTCTGGGTTGTTTCTCCTTTTTTCAGTGGGAATTCGA
CCTGACTGTTCTGGCTGCTGTACTGGCTATCCTGGGCTATTCGGTAAATGAGTCTGTAGTCATCTCTGATCGGATTCGAG
AAAATTTCCGCAAATTACGTAAAGCAGATGTAACGAGAGTAATTAATAACGCTATTACCGAAACTATGTCGCGCACCGTA
ATTACTCACGGAAGCACACAACTGGTTGTGATCTCTATGCTTTTATTTGGTGGAGAGGCATTACATAATTTTGCGTTAGC
ACTCACAATTGGCATTTTGTTCGGTATTTATTCCTCCATCATGATTGCCAGCCCGATACTTCTATTACTGGGAGCCAAGC
GAGAAGATCTGGTCAAAATTGAACGTAAACCTCAGGAAGAAGCTGTGCCATGA

Upstream 100 bases:

>100_bases
GTACGGAAACCGCAAACTTGCGCGTGTCCCGATCGGAACCATCAAAATATCGAAGAAAAGTAGCAACAAACATTAAAATA
CTCACTGAAACTGGATAACC

Downstream 100 bases:

>100_bases
TGTTGTTTTTGGTATCTCGAATAAAAAATTTTTGATTTTATGGCTGGACTCAATCCACAAACACCCATTCCTACAGAGTT
AAAGTTGTATCGTAAATCAG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPADLDKTRKVLASIGMPDAIVQN
FGTSRDVIIRLPVKAEHTGGNLSETVMTALKKDDPSVEMRRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKF
GVSCIIANLHDVLIILGCFSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRKADVTRVINNAITETMSRTV
ITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDLVKIERKPQEEAVP

Sequences:

>Translated_310_residues
MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPADLDKTRKVLASIGMPDAIVQN
FGTSRDVIIRLPVKAEHTGGNLSETVMTALKKDDPSVEMRRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKF
GVSCIIANLHDVLIILGCFSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRKADVTRVINNAITETMSRTV
ITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDLVKIERKPQEEAVP
>Mature_310_residues
MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPADLDKTRKVLASIGMPDAIVQN
FGTSRDVIIRLPVKAEHTGGNLSETVMTALKKDDPSVEMRRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKF
GVSCIIANLHDVLIILGCFSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRKADVTRVINNAITETMSRTV
ITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDLVKIERKPQEEAVP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=300, Percent_Identity=39.6666666666667, Blast_Score=250, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34473; Mature: 34473

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPAD
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCC
LDKTRKVLASIGMPDAIVQNFGTSRDVIIRLPVKAEHTGGNLSETVMTALKKDDPSVEMR
HHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCEECCCCCCHHHHHHHHHHCCCCCHHHH
RVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKFGVSCIIANLHDVLIILGCFS
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRKADVTRVINNAITETMSRTV
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDLVKI
HCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ERKPQEEAVP
HCCCCCCCCC
>Mature Secondary Structure
MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPAD
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCC
LDKTRKVLASIGMPDAIVQNFGTSRDVIIRLPVKAEHTGGNLSETVMTALKKDDPSVEMR
HHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCEECCCCCCHHHHHHHHHHCCCCCHHHH
RVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKFGVSCIIANLHDVLIILGCFS
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRKADVTRVINNAITETMSRTV
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDLVKI
HCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ERKPQEEAVP
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]