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The map label for this gene is secD [H]

Identifier: 114331422

GI number: 114331422

Start: 1513803

End: 1515650

Strand: Direct

Name: secD [H]

Synonym: Neut_1433

Alternate gene names: 114331422

Gene position: 1513803-1515650 (Clockwise)

Preceding gene: 114331421

Following gene: 114331423

Centisome position: 56.89

GC content: 50.65

Gene sequence:

>1848_bases
ATGAACCGCTACCCCCTCTGGAAATATATCGTCATCGCTGTTTCAATCCTGCTTGGACTGCTGTACACCCTGCCTAATTT
TTTTGGTGAATCCCCCGCTGTTCAGATTTCACCACTACGAGCTGACGTACGGACCGATACAGCACTTTTGCAACGTTTGG
AACAAGTCCTTAACCAGCAAAATCTTCCGTATAACGGAACAATACTGGAAGCAACCGGGATCAAAATCCGGTTTGCCGAT
ACAGATACTCAGATCAAGGCGAAAGATATTCTAAGTTCCGAAGTTGGTAGCGATTATGTTGTTGCACTAAACCTGCTGCC
CAACTCCCCGCAATGGATGCGTCACATTGGTGCTTTGCCCATGTATCTGGGTCTGGATCTACGCGGCGGAGTTCATTTTA
TGTTGCAGGTGGATATGGCAGGTGCGCTCACAAAATCCCTCGATCGTTTCAGCGCTGATCTGCGCAGTACATTGCGTGAG
CAAAGGATCCCTTCTGCCGGTATTGAGCGGGATCGGTCAAAAATTATAATCAGATTCCGCGATGAGCAAGCACGGGAAAA
AGCAATTACGGAACTTGGAAAAGCATTTGAAGATCTCGCTTTTCAATCAGAAGAGGTTGGCGGAGAAGCACGTCTGACAA
TCTCCATCAAGCCGGAAGCACTAGTGCGTATGCAAAATACTGCCGTCCAGCGCAATATCACCACGCTGCGCAACCGAGTC
AACGAGCTGGGTGTGGCAGAACCGATTATTCAGCAGGCAGGGGCCGATCGGGTAATCGTGCAGTTACCGGGTGTACAGGA
TACTGCCAAGGCGAAGGATATTCTGGGCAGAACCGCCACGCTGGAAGTACGCATGGTCGATGAAGAGGGTGATATTGATG
CCGCCTTGCGCGGATCAGTTCCTCCTGGCACCGAATTGTTCACCGAGCGCGGGGGTGGCCCACTCTTGGTCAAAAAACAG
ATCCTGCTTACCGGTGACCGTATCACGGACGCCCAACCCGGATTTGATCAGGATCACCAACCTGCTGTCCATTTGACACT
AGACAACAATGGTTCACGAATTTTCAAGCAGCTAACACGTAATAACGTAGGTAAGCGCATGGCCATTCTGCTGGTGGAAA
AAAATCTGACCGAGGTGGTTACTGCGCCGGTTATTCGCGAAGAAATCGGTGGCGGGCGCGTACAGATCAGCGGAAAAATG
AGCAGTATTGAAGCACGTGATGTTGCTCTGCTGTTGCGTGCGGGTGCGCTGGCTGCCCCCATGGAAATCGTCGAGGAGCG
TACGATAGGACCAAGCCTGGGAGCTGAAAATATCTCCAAAGGCTTCAATTCGACTCTGTTTGGTTTCCTGGCGGTAGCCA
CATTCATCATGGCTTATTACTCGGCCATTGGTGTCATCTCTGTTGTGGCACTCGCCATCAACCTGCTGTTTCTCATTGGA
TTGCTCTCAATCTTGCAAGCGACATTAACACTCCCCGGAATGGCCGGAATGGCGCTGACTGTCGGGATGGCAATTGACGC
AAACGTACTGATCAATGAACGTATCCGCGATGAAATCCGCCATGGTGCTTCACCACAGGCAGCCATCCATGCCGGGTATG
AGCGTGCATGGGATGCGATTATCGATACCAACCTAACCACGTTACTGGCTGGCCTTGGCTTGATGATATTCGGTAGCGGG
CCGATAAAAGGTTTCGCTGTCGTACTATGTCTGGGAATTCTGACCACACTCTTCAGTGCAGTCACCGTTTCGCGCGCAAT
GGTTAATCTATTGTACGGAAACCGCAAACTTGCGCGTGTCCCGATCGGAACCATCAAAATATCGAAGAAAAGTAGCAACA
AACATTAA

Upstream 100 bases:

>100_bases
ACGAAAAGAATTAATTTACCGGTATGCTCCGCTCTTTTTCGATTATCTGAAATTGTGGCGTAACTTCCGGCACCCCCTTT
CTTCTGAAATACTGGCCATT

Downstream 100 bases:

>100_bases
AATACTCACTGAAACTGGATAACCATGGATTTTTTCAGATTCGAACGCGATATTCCTTTTACTCGCTGGGGAAAATTATC
AATGACTTTTTCCCTGATCA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQNLPYNGTILEATGIKIRFAD
TDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLRE
QRIPSAGIERDRSKIIIRFRDEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRNRV
NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRGSVPPGTELFTERGGGPLLVKKQ
ILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFKQLTRNNVGKRMAILLVEKNLTEVVTAPVIREEIGGGRVQISGKM
SSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLFGFLAVATFIMAYYSAIGVISVVALAINLLFLIG
LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDEIRHGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSG
PIKGFAVVLCLGILTTLFSAVTVSRAMVNLLYGNRKLARVPIGTIKISKKSSNKH

Sequences:

>Translated_615_residues
MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQNLPYNGTILEATGIKIRFAD
TDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLRE
QRIPSAGIERDRSKIIIRFRDEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRNRV
NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRGSVPPGTELFTERGGGPLLVKKQ
ILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFKQLTRNNVGKRMAILLVEKNLTEVVTAPVIREEIGGGRVQISGKM
SSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLFGFLAVATFIMAYYSAIGVISVVALAINLLFLIG
LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDEIRHGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSG
PIKGFAVVLCLGILTTLFSAVTVSRAMVNLLYGNRKLARVPIGTIKISKKSSNKH
>Mature_615_residues
MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQNLPYNGTILEATGIKIRFAD
TDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLRE
QRIPSAGIERDRSKIIIRFRDEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRNRV
NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRGSVPPGTELFTERGGGPLLVKKQ
ILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFKQLTRNNVGKRMAILLVEKNLTEVVTAPVIREEIGGGRVQISGKM
SSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLFGFLAVATFIMAYYSAIGVISVVALAINLLFLIG
LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDEIRHGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSG
PIKGFAVVLCLGILTTLFSAVTVSRAMVNLLYGNRKLARVPIGTIKISKKSSNKH

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=619, Percent_Identity=44.4264943457189, Blast_Score=517, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66807; Mature: 66807

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
NLPYNGTILEATGIKIRFADTDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGALP
CCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCH
MYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLREQRIPSAGIERDRSKIIIRFR
HHCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
DEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRNRV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRGSV
HHCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCEECCCC
PPGTELFTERGGGPLLVKKQILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFKQLTR
CCCHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
NNVGKRMAILLVEKNLTEVVTAPVIREEIGGGRVQISGKMSSIEARDVALLLRAGALAAP
CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHH
MEIVEERTIGPSLGAENISKGFNSTLFGFLAVATFIMAYYSAIGVISVVALAINLLFLIG
HHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDEIRHGASPQAAIHAGYERAWDAI
HHHHHHHHHCCCCCCCHHHHEEHEECCHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH
IDTNLTTLLAGLGLMIFGSGPIKGFAVVLCLGILTTLFSAVTVSRAMVNLLYGNRKLARV
HHCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PIGTIKISKKSSNKH
CEEEEEEECCCCCCC
>Mature Secondary Structure
MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
NLPYNGTILEATGIKIRFADTDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGALP
CCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCH
MYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLREQRIPSAGIERDRSKIIIRFR
HHCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
DEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRNRV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRGSV
HHCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCEECCCC
PPGTELFTERGGGPLLVKKQILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFKQLTR
CCCHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
NNVGKRMAILLVEKNLTEVVTAPVIREEIGGGRVQISGKMSSIEARDVALLLRAGALAAP
CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHH
MEIVEERTIGPSLGAENISKGFNSTLFGFLAVATFIMAYYSAIGVISVVALAINLLFLIG
HHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDEIRHGASPQAAIHAGYERAWDAI
HHHHHHHHHCCCCCCCHHHHEEHEECCHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH
IDTNLTTLLAGLGLMIFGSGPIKGFAVVLCLGILTTLFSAVTVSRAMVNLLYGNRKLARV
HHCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PIGTIKISKKSSNKH
CEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]