| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477593
Identifier: 113477593
GI number: 113477593
Start: 6437164
End: 6437790
Strand: Reverse
Name: 113477593
Synonym: Tery_4175
Alternate gene names: NA
Gene position: 6437790-6437164 (Counterclockwise)
Preceding gene: 113477594
Following gene: 113477589
Centisome position: 83.07
GC content: 33.49
Gene sequence:
>627_bases ATGATCGCCTTAACTTTTTTATTCTTATCATTTTTGACAATTGAGAATAAATATGCTAAAGCAATTGATGATTGCCAATC CCCTGCTAGTAATGAATACTTATTAGTAATACTTACAGAGACAACAGTAAATGAAGATATTCTTCGCCAAAGTTTACCAG AAGATATTAGAATAGATATATGTAGTTACATTGACCAGACAGTTAGTAGTATCCGAGGCTTTGATGACGAAGATGTGGCT AATGATTGGGCTAGCTACATTCAAGACATTTTAGGATTTCCTGCTTATGTCGTTAAACCAAGGGAAGAGAAAACATCACG TAATGAATCTTTACCAGTACTTCCAGAAGCAGGCTATAACCCTCAACCTTTAGGTAATGGTTTTGCTGTTTTAGTTGATT ATAATAATCAACCAGAAGTAGCTTTAAAATTACAAAGAAGCTTAGGGCGTAACGTAGGTTTAGCTGCTTATGGGCAAAAA CCTTTTTTATTAGTAACTTATACAAATAGAGTTGGAGCCGCAACAAATAGTATGGTTAAGTTAAGCAATCGCGGATTTTT AGCTTTTATGGTAGATAGTAGTAAGGTGACATTAATTAGTCCTAGAATTAAACTACAGAAATTTTAA
Upstream 100 bases:
>100_bases CTGCCCAACAGCTGGGGAGGGTGTCAATATTAACCATTCTTTCGCAATGATAAATACTCAACTGCAATTGAATAGATCTT GGTTGGGGAAGCTAACAACA
Downstream 100 bases:
>100_bases GGATAGTGAGGTACAGTTTAATATCAATCTCTATTTCCCATCTTCCTAAACTCGTTAAACTTTGTACCTCTAAAACGGCA AAATTGTTGTCAGCAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MIALTFLFLSFLTIENKYAKAIDDCQSPASNEYLLVILTETTVNEDILRQSLPEDIRIDICSYIDQTVSSIRGFDDEDVA NDWASYIQDILGFPAYVVKPREEKTSRNESLPVLPEAGYNPQPLGNGFAVLVDYNNQPEVALKLQRSLGRNVGLAAYGQK PFLLVTYTNRVGAATNSMVKLSNRGFLAFMVDSSKVTLISPRIKLQKF
Sequences:
>Translated_208_residues MIALTFLFLSFLTIENKYAKAIDDCQSPASNEYLLVILTETTVNEDILRQSLPEDIRIDICSYIDQTVSSIRGFDDEDVA NDWASYIQDILGFPAYVVKPREEKTSRNESLPVLPEAGYNPQPLGNGFAVLVDYNNQPEVALKLQRSLGRNVGLAAYGQK PFLLVTYTNRVGAATNSMVKLSNRGFLAFMVDSSKVTLISPRIKLQKF >Mature_208_residues MIALTFLFLSFLTIENKYAKAIDDCQSPASNEYLLVILTETTVNEDILRQSLPEDIRIDICSYIDQTVSSIRGFDDEDVA NDWASYIQDILGFPAYVVKPREEKTSRNESLPVLPEAGYNPQPLGNGFAVLVDYNNQPEVALKLQRSLGRNVGLAAYGQK PFLLVTYTNRVGAATNSMVKLSNRGFLAFMVDSSKVTLISPRIKLQKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23238; Mature: 23238
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALTFLFLSFLTIENKYAKAIDDCQSPASNEYLLVILTETTVNEDILRQSLPEDIRIDI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCHHHHHH CSYIDQTVSSIRGFDDEDVANDWASYIQDILGFPAYVVKPREEKTSRNESLPVLPEAGYN HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCCCCC PQPLGNGFAVLVDYNNQPEVALKLQRSLGRNVGLAAYGQKPFLLVTYTNRVGAATNSMVK CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCEEE LSNRGFLAFMVDSSKVTLISPRIKLQKF ECCCCEEEEEECCCEEEEECCCEEEECC >Mature Secondary Structure MIALTFLFLSFLTIENKYAKAIDDCQSPASNEYLLVILTETTVNEDILRQSLPEDIRIDI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCHHHHHH CSYIDQTVSSIRGFDDEDVANDWASYIQDILGFPAYVVKPREEKTSRNESLPVLPEAGYN HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCCCCC PQPLGNGFAVLVDYNNQPEVALKLQRSLGRNVGLAAYGQKPFLLVTYTNRVGAATNSMVK CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCEEE LSNRGFLAFMVDSSKVTLISPRIKLQKF ECCCCEEEEEECCCEEEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA